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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcaaatatcaatgcaggcatgctgatgacttatgccattccatcatgcagtgaccactgctataattgaaggcttgttctatagctttagaatttgaacagtggcaagagcattatttcatttattgttgtatatctcttgattaaactgtggagcttaatctccttccatcacttgtagGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATTAGGACAAATCACCAAAAAGCAGCCAATGGGTCATTCAGGCAAGTTC

Basic information

species Glycine max
transcript GLYMA11G19660.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 3
gttagtcaaatatcaatgcaggcatgctgatgacttatgccattccatcatgcagtgaccactgctataattgaaggcttgttctatagctttagaatttgaacagtggcaagagcattatttcatttattgttgtatatctcttgattaaactgtgga-----gcttaatctccttccatcacttgtagGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATTAGGACAAATCACCAAAAAGCAGCCAATGGGTCATTCAGGCAAGTTC
                                                                                       || |||    ||||  ||      |    || ||||   | ||  |   ||||   |||  | || |||| |      || | | | ||| |||| | |  ||||||| || |||||||| ||||| |||||||||||||| || ||||||||||| ||  |||||||    || | | |||||||| | | |||| | ||| 
---------------------------------------------------------------------------------------agatttt---tttggtcaaatttcaatttataatttgcctgatcatataatattgtttggatgaattgtgtattgctactcactgttctttcatctcattcagGATGATACTCTCTTGGTCATTGGTTGGGGAACATCTGTGAAGATTGCTTCAATAAGAGCAAATCAGTCCAATGGAACCAATGGGACTTACAGGAATGTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtatatctcttgattaaactgtggagcttaatctccttccatcacttgtagGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATTAGGACAAATCACCAAAAAGCAGCCAATGGGTCATTCAGGCAAGTTC
                             gcttaat  putative branch site (score: 4)
                                   tctccttccatcactt  CT-rich tract
             ttgattaaa  TA-rich tract