1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taataattggagcacatggatgtacaacaagcaattaagacaagaaaatattctacacacaatggaattttatatgatattaatacgtgcgattttgtagGTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCACCTCTTCTAAGCCTTCCTTATGCATTCACCTTCTTAAGCTTAGTTATTG
species | Glycine max |
transcript | GLYMA11G19500.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCACCAAAAAGATGTGGATGCTGGCGCTCTCTTTGTCCTCAAATCCGAAG GTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCAEST: gi|19269590|gb|BM885846.1|BM885846
genomic: CCACCAAAAAGATGTGGATGCTGGCGCTCTCTTTGTCCTCAAATCCGAAGgtattcatca ... gattttgtagGTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCA
EST: CCACCAAAAAGATGTGGATGCTGGCGCTCTCTTTGTCCTCAAATCCGAAG GTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCAEST: gi|17964166|gb|BM270905.1|BM270905
genomic: CCACCAAAAAGATGTGGATGCTGGCGCTCTCTTTGTCCTCAAATCCGAAGgtattcatca ... gattttgtagGTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCA
EST: CCACCAAAAAGATGTGGATGCTGGCGCTCTCTTTGTCCTCAAATCCGAAG GTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCA
genomic: CCACCAAAAAGATGTGGATGCTGGCGCTCTCTTTGTCCTCAAATCCGAAGgtattcatca ... gattttgtagGTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCA
aaatattctacacacaatggaattttatatgatattaatacgtgcgattttgtagGTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCACCTCTTCTAAGCCTTCCTTATGCATTCACCTTCTTAAGCTTAGTTATTG
tattaat putative branch site (score: 2)
acaatggaattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataattggagcacatggatgtacaacaagcaattaagacaagaaaatattctacacacaatggaattttatatgatattaatacgtgcgattttgtagGTTCTTGGATGCATTGTGGGTACCTCTTTGACAACTTCAATTGTGGCACCACCTCTTCTAAGCCTTCCTTATGCATTCACCTTCTTAAGCTTAGTTATTG
- - - - - - - catggat
- - - - - - - - - - - - - acaagca
- - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacgtgc