1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagcttgttatgcttttatgttttggtttggtttggtttgttatgattgatatactacttctgatctgtatcagcaaatattaccatgaactattctttttgagtctggggaaagttggttaactttatctatgtgtgttttatgatttggtcttgttcagGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGGGGCCAAAGGGAATG
species | Glycine max |
transcript | GLYMA11G19220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATTTTTAAACATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATG GCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGEST: gi|254325804|gb|GR838685.1|GR838685
genomic: ATATTTTTAAACATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATGgtgagcttgt ... tcttgttcagGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTG
EST: ATATTTTTAAACATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATG GCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGEST: gi|298183591|gb|HO028804.1|HO028804
genomic: ATATTTTTAAACATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATGgtgagcttgt ... tcttgttcagGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTG
EST: ATATTTTTAAACATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATG GCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGEST: gi|193630975|gb|FK584528.1|FK584528
genomic: ATATTTTTAAACATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATGgtgagcttgt ... tcttgttcagGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTG
EST: AGAAAAAGGAGAGCGGGCCAGAATG GCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTG
genomic: AGAAAAAGGAGAGCGGGCCAGAATGgtgagcttgt ... tcttgttcagGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTG
tggggaaagttggttaactttatctatgtgtgttttatgatttggtcttgttcagGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGGGGCCAAAGGGAATG
ggttaac putative branch site (score: 3)
tcttgttc putative PPT
ttaactttatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttgttatgcttttatgttttggtttggtttggtttgttatgattgatatactacttctgatctgtatcagcaaatattaccatgaactattctttttgagtctggggaaagttggttaactttatctatgtgtgttttatgatttggtcttgttcagGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGGGGCCAAAGGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA