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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactttctctgatactctcttttttctcatttttattacaatgagtgactctacattggttttcagGCATCTGGCCGGAATCGGAAAGCTTCACTGATTATGGATTAGGTCCTGTGCCCAAAAAATTCAAGGGAGAGTGTGTTACTGGTGAAAAATTTACACTAGC

Basic information

species Glycine max
transcript GLYMA11G19130.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19130.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0080g00150.t01 (Vitis vinifera), 3'ss of exon 3
------------------------------------------------------------gtaagtactttctctgatactctcttttttctcatttttattacaatgagtgactctacattggtttt-cagGCATCTGGCCGGAATCGGAAAGCTTCACTGATTATGGATTAGGTCCTGTGCCCAAAAAATTCAAGGGAGAGTGTGTTACTGGTGAAAAATTTACACTAGC
                                                              |||        |    | || ||  |  | ||   | ||   |  |  |   |  | |||  | || ||||  | ||||| || || || ||||||| |||| | |||||||| | ||| || || |||||||||||||| ||||| | ||||||||| ||||||  |||
gtaactaccaccattacaccatttggaccagaatgaataaaaagaaaagggggaaaacaaaaaagcggcagtacctcca-tccctgctgccacaccataatcctatcgttttctttcatatttatcttgcagGAGTTTGGCCAGAGTCAGAGAGCTTCAATGATGAAGGATTAGGCCATGTACCAAAGAAATTCAAGGGAGAATGTGTCAATGGTGAAAATTTTACATCAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactctcttttttctcatttttattacaatgagtgactctacattggttttcagGCATCTGGCCGGAATCGGAAAGCTTCACTGATTATGGATTAGGTCCTGTGCCCAAAAAATTCAAGGGAGAGTGTGTTACTGGTGAAAAATTTACACTAGC
 ctctgat  putative branch site (score: 4)
                                                ttttc  putative PPT
        ttttttctcattttta  TA-rich tract