1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtaaaatttcgttcatatgcttaataaaaagaaaatacattttggaaggtatacattttagatctgggataccaaacattatttggatttaaaggtcatagggctgagcttttttgccctttttttctatccttgccttgacagtatgttttttggtctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCTTGTTGTGGAGGCATCTCTCTACCGTCCTGCAGATCCTAAATTGTCACT
species | Glycine max |
transcript | GLYMA11G18760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCT GGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCEST: gi|254321070|gb|GR827519.1|GR827519
genomic: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCTgtgagtaaaa ... tctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
EST: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCT GGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCEST: gi|9983078|gb|BE657186.1|BE657186
genomic: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCTgtgagtaaaa ... tctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
EST: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCT GGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCEST: gi|193683100|gb|FK621356.1|FK621356
genomic: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCTgtgagtaaaa ... tctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
EST: TGGATGAAAAACTTTAAACTCCT GGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCEST: gi|192321054|gb|FK013528.1|FK013528
genomic: TGGATGAAAAACTTTAAACTCCTgtgagtaaaa ... tctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
EST: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCT GGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCEST: gi|192321053|gb|FK013527.1|FK013527
genomic: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCTgtgagtaaaa ... tctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
EST: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCT GGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCEST: gi|11413060|gb|BF425080.1|BF425080
genomic: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCTgtgagtaaaa ... tctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
EST: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCT GGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCEST: gi|57575163|gb|CX548138.1|CX548138
genomic: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCTgtgagtaaaa ... tctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
EST: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCT GGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
genomic: CAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTTAAACTCCTgtgagtaaaa ... tctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGC
ttttgccctttttttctatccttgccttgacagtatgttttttggtctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCTTGTTGTGGAGGCATCTCTCTACCGTCCTGCAGATCCTAAATTGTCACT
ccttgac putative branch site (score: 4)
tcttt putative PPT
tttttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaaaatttcgttcatatgcttaataaaaagaaaatacattttggaaggtatacattttagatctgggataccaaacattatttggatttaaaggtcatagggctgagcttttttgccctttttttctatccttgccttgacagtatgttttttggtctttgacagGGCCTTATTGACATGCTTCATTGTTATTGTTCTTTATTTAATAATCGCTGCTTGTTGTGGAGGCATCTCTCTACCGTCCTGCAGATCCTAAATTGTCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
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