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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG

Basic information

species Glycine max
transcript GLYMA11G15230.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15230.2 (Glycine max), 3'ss of exon 3
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
-ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG--------------
    || | |      ||| |  |||||   |      | || || ||  |||||||    |||||    ||    |||           || |||| ||||||||||||||||||||||||||| ||  || | || || || || ||||| |||||||| || |||||||| || || |||||||              
gtactttaaagagtatttttctatgaagccttgttgtgagat-tgattatgttcaata---tatttgacactatggttt---------ggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG

upper sequence: GLYMA11G15230.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G55280.1 (Arabidopsis thaliana), 3'ss of exon 3
ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG--------------
               |  ||| | ||  |  |   | ||||  ||||||  | ||   ||              | |  | | | |   ||    |||||||| |||||||| |||||||| |||||  ||||||| |||||||| ||||| ||||||||||| ||||| || ||||| ||||||               
--------------gtaaacactaaaacttcactgagatatg-ggtttatgtaaacatgg--------------agtgatgagtgtatgtttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGCTTTGGATGTGGCTAACAAAATCGGGATCATCTAATCTGATCATTGTCGC

upper sequence: GLYMA11G15230.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 3'ss of exon 3
--ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgt--tgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG--------------
   | ||| |||    ||| |   ||||  |   ||   | | ||| | |  | |   ||  |||||||  |  |   |||| |  || | || |||  | |||||||||||| ||||||||||| |||||  |||||||||| || || ||||| ||||||||||| ||||| |||||||| |||||||              
ttagattg-gataa-acttaattatgaatatcctgagcaaga-atgttcttttgctgggaaatattttcgacaact-cttctgacattaatttttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA

upper sequence: GLYMA11G15230.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 3'ss of exon 2
ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattt---tctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG----------
  |||   ||     | || | |  |||||  |   | |   |  |  ||||  ||    |   |   | |  | | || | |   ||||  || | || |||||||||||| || ||||| || |||||  ||||||| || ||||| ||||| ||||||||||||||||||||||| ||||| |||           
--tttcttatatatatatata-tcgagttggtggtgttttctttttccagttttatacctttcctaaattttgttctatatatccttttgtcttttatttcagGCCTGATGGGACAAAGAAAGCATATGTTAGGTTGACGCCAGATTATGATGCTTTGGATGTGGCAAACAAGATTGGTATTATTTAAAATAGTAACCA

upper sequence: GLYMA11G15230.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 3'ss of exon 3
------ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG--------------
      ||| ||| ||   |   |      |||| |   |   || |    |   | |     |  |  | |   ||  |  |||||  ||||     |||||||||||||||||||||||||||||||||||  ||||||| || || || ||||| |||||||||||||||||||| ||||| ||||||               
cagaatggtgtgatatatgggcatcataccaagtggattagcgatgtggcatagtggttgtcaaattgatatgaacta-accttctatctttg-----tgttgcagGCCTGATGGAACCAAGAAGGCTTATGTTAGGTTGACACCGGACTATGATGCCTTGGATGTGGCAAACAAGATCGGGATCATCTAAATCTATATTGCCTTT

upper sequence: GLYMA11G15230.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S47_274V6.1 (Physcomitrella patens), 3'ss of exon 1
ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaa---atttgaa--ttctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG--------------
     || ||  ||      | |||  |  |   | |  |  |   ||  | |   |  | |  | |  |    |||||  |    | | ||  |  | ||  |||||||||||| | |||||||| |||||  | |||||  |||||||||||||  | |||||||| ||||||||||| || ||||||               
-----gaaatcacggcaatgattgagttaatcagagtccaatttacttgttccggaggtgaaactccatccctgatttcctatgtgtctcaacatgtttttctagGCCTGATGGAGCTAAGAAGGCGTATGTGAGATTGACAGCTGATTACGATGCGCTTGATGTGGCCAACAAGATTGGTATCATCTAAATTTTCTGTTCAATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193441954|gb|FK407821.1|FK407821
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAGAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|213613664|gb|DB963324.1|DB963324
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|10252957|gb|BE820723.1|BE820723
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|5605689|gb|AI899850.1|AI899850
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|209728121|gb|BW655356.1|BW655356
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|9821013|gb|BE556523.1|BE556523
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|22522979|gb|BU081790.1|BU081790
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192334633|gb|FK025866.1|FK025866
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|56173131|gb|CV997257.1|CV997257
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|7588837|gb|AW704624.1|AW704624
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|10235468|gb|BE804356.1|BE804356
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|208124170|gb|GD920984.1|GD920984
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGA
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGA
EST: gi|13240461|gb|BG359770.1|BG359770
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192332926|gb|FK025023.1|FK025023
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|193658730|gb|FK600777.1|FK600777
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAGAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG
                               ttctaaa  putative branch site (score: 2)
                                            ttctgtt  putative PPT
                            aatttctaaatttgaa  TA-rich tract