Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA

Basic information

species Glycine max
transcript GLYMA11G15230.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15230.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
-ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA
    || | |      ||| |  |||||   |      | || || ||  |||||||    |||||    ||    |||           || |||| ||||||||||||||||||||||||||| ||  || | || || || || ||||| |||||||| || |||||||| || || |||||||    |   |     
gtactttaaagagtatttttctatgaagccttgttgtgagat-tgattatgttcaat---atatttgacactatggttt---------ggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG

upper sequence: GLYMA11G15230.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G55280.1 (Arabidopsis thaliana), 3'ss of exon 3
ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA-
               |  ||| | ||  |  |   | ||||  ||||||  | ||   ||              | |  | | | |   ||    |||||||| |||||||| |||||||| |||||  ||||||| |||||||| ||||| ||||||||||| ||||| || ||||| ||||||  |  | | | | |  
--------------gtaaacactaaaacttcactgagatatg-ggtttatgtaaacatgg--------------agtgatgagtgtatgtttgtatgcagGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGCTTTGGATGTGGCTAACAAAATCGGGATCATCTAATCTGAT-CATTGTCGC

upper sequence: GLYMA11G15230.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 3'ss of exon 3
--ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgt--tgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA
   | ||| |||    ||| |   ||||  |   ||   |   ||| | |  | |   ||  |||||||  |  |   |||| |  || | || |||  | |||||||||||| ||||||||||| |||||  |||||||||| || || ||||| ||||||||||| ||||| |||||||| ||||||||||| | ||    |
ttagattg-gataa-acttaattatgaatatcctgag-caagaatgttcttttgctgggaaatattttcgacaact-cttctgacattaatttttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA

upper sequence: GLYMA11G15230.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 3'ss of exon 2
ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattt---tctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA
  |||   ||     | || |  || ||||  |   | |   |  |  ||||  ||    |   |   | |  | | || | |   ||||  || | || |||||||||||| || ||||| || |||||  ||||||| || ||||| ||||| ||||||||||||||||||||||| ||||| |||  ||||| | |    
--tttcttatatatatatatatcga-gttggtggtgttttctttttccagttttatacctttcctaaattttgttctatatatccttttgtcttttatttcagGCCTGATGGGACAAAGAAAGCATATGTTAGGTTGACGCCAGATTATGATGCTTTGGATGTGGCAAACAAGATTGGTATTATTTAAAATAGTAACCA----

upper sequence: GLYMA11G15230.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 3'ss of exon 3
------ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA
      ||| ||| ||   |   |      |||| |   |   || |    |   | |     |  |  | |   ||  |  |||||  ||||     |||||||||||||||||||||||||||||||||||  ||||||| || || || ||||| |||||||||||||||||||| ||||| ||||||     ||        
cagaatggtgtgatatatgggcatcataccaagtggattagcgatgtggcatagtggttgtcaaattgatatgaacta-accttctatctttg-----tgttgcagGCCTGATGGAACCAAGAAGGCTTATGTTAGGTTGACACCGGACTATGATGCCTTGGATGTGGCAAACAAGATCGGGATCATCTAAATCTATATTGCCTTT

upper sequence: GLYMA11G15230.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S47_274V6.1 (Physcomitrella patens), 3'ss of exon 1
ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaa---atttgaa--ttctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA
     || ||  ||      | |||  |  |   | |  |  |   ||  | |   |  | |  | |  |    |||||  |    | | ||  |  | ||  |||||||||||| | |||||||| |||||  | |||||  |||||||||||||  | |||||||| ||||||||||| || ||||||  |      |     
-----gaaatcacggcaatgattgagttaatcagagtccaatttacttgttccggaggtgaaactccatccctgatttcctatgtgtctcaacatgtttttctagGCCTGATGGAGCTAAGAAGGCGTATGTGAGATTGACAGCTGATTACGATGCGCTTGATGTGGCCAACAAGATTGGTATCATCTAAATTTTCTGTTCAATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301138|gb|FG990148.1|FG990148
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|22522979|gb|BU081790.1|BU081790
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|56173131|gb|CV997257.1|CV997257
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192305205|gb|FG993957.1|FG993957
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|7041642|gb|AW471594.1|AW471594
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|31463801|gb|CD405829.1|CD405829
EST:     GTGAAGAAAATGTATGAAATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192308707|gb|FG999760.1|FG999760
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192334633|gb|FK025866.1|FK025866
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|6071968|gb|AW101355.1|AW101355
EST:     GAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|151412074|gb|EV281886.1|EV281886
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|31306247|gb|CD391450.1|CD391450
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|209728121|gb|BW655356.1|BW655356
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|209728122|gb|BW655357.1|BW655357
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|9821013|gb|BE556523.1|BE556523
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|10235468|gb|BE804356.1|BE804356
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|26043872|gb|CA782203.1|CA782203
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192308708|gb|FG999761.1|FG999761
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192317680|gb|FK009020.1|FK009020
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|208162112|gb|GD965223.1|GD965223
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAG-AAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|6071754|gb|AW101141.1|AW101141
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192334634|gb|FK025867.1|FK025867
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|254329539|gb|GR839092.1|GR839092
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|7588837|gb|AW704624.1|AW704624
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|254329540|gb|GR839093.1|GR839093
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|18040796|gb|BM309090.1|BM309090
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|193658730|gb|FK600777.1|FK600777
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAGAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|58023447|gb|CX710188.1|CX710188
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192317679|gb|FK009019.1|FK009019
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|213613664|gb|DB963324.1|DB963324
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|5605689|gb|AI899850.1|AI899850
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|58015104|gb|CX701846.1|CX701846
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|213603097|gb|DB980993.1|DB980993
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|193441954|gb|FK407821.1|FK407821
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAGAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|208124170|gb|GD920984.1|GD920984
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGA
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGA
EST: gi|13240461|gb|BG359770.1|BG359770
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|31460067|gb|CD402095.1|CD402095
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192332926|gb|FK025023.1|FK025023
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|192329617|gb|FK023695.1|FK023695
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|151405988|gb|EV275803.1|EV275803
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|151403678|gb|EV273488.1|EV273488
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
EST: gi|151402792|gb|EV272605.1|EV272605
EST:     GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC
genomic: GTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaact ... tctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA
                               ttctaaa  putative branch site (score: 2)
                                            ttctgtt  putative PPT
                            aatttctaaatttgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA

- - - -gatgccg
- - - - - - - - -tacagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - caatgag