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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatcttccatggatcgtaattgtggtatatagtttgtcagtaaaacattttccatgtagcttcctactgtgtttcacaataacttcataactttttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCTGCTCTGGTTCAAGGTGCCACAAATGTTTTCTG

Basic information

species Glycine max
transcript GLYMA11G15030.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15030.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g04350.t01 (Vitis vinifera), 3'ss of exon 3
tatcttccatggatcgtaa--ttgtggtatatagtttgtcagtaaaacattttccatgtagcttcctactg-tgtttcaca--ataacttcataactt--tttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCTGCTCTGGTTCAAGGTGCCACAAATGTTTTCTG
 ||||   ||  |||  |   || | | | ||   |  |          |||||  | | |  | | | || ||||  | |  ||   ||   |  ||  ||||||||||||||| ||||| ||||| ||| | ||||||||  |||| |||||||||||||| ||||||||||| |||||||| |||||
-atctgtaatcaatcaaaggcttttagcagatgactctttt------tcttttcactctggtgttccaatgatgttgaataggatgcttttgcattttcttttgcagTTATTTGAGGTTCAACTTGAGAATTCTGAAGTGCTCTTCCGTTATTCATCTGCTCTTGTTCAAGGTGCTACAAATGTGTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901650|gb|BE610618.1|BE610618
EST:     GGAGCCAATCATTTGCTTCACATATTTTTGCCCTACTGTTTCACAAATGG                         TTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCT
genomic: GGAGCCAATCATTTGCTTCACATATTTTTGCCCTACTGTTTCACAAATGGgtatgtgagc ... ctttttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCT
EST: gi|17964327|gb|BM271064.1|BM271064
EST:     TTTTGCCCTACTGTTTCACAAATGG                         TTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCT
genomic: TTTTGCCCTACTGTTTCACAAATGGgtatgtgagc ... ctttttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttccatgtagcttcctactgtgtttcacaataacttcataactttttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCTGCTCTGGTTCAAGGTGCCACAAATGTTTTCTG
                                       tcataac  putative branch site (score: 2)
                                             ctttttgc  CT-rich tract
                                         ataacttttt  TA-rich tract