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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggatgttgttggttattaggcatccagtttgatctcgagtaaatattgattttgttgtatgttaaaacaaaagcattgttctttctaaactattcattttgttgccctctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAG

Basic information

species Glycine max
transcript GLYMA11G14960.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846772|gb|BF071420.1|BF071420
EST:     ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAG                         GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
genomic: ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAGgtgagggatg ... tctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
EST: gi|14258971|gb|BG881879.1|BG881879
EST:     ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAG                         GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
genomic: ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAGgtgagggatg ... tctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
EST: gi|10235360|gb|BE804248.1|BE804248
EST:     ATCTTCAACCATAGATTAAGGCCATTCATGATAGATATGCTGGCAATCAG                         GAAAGAATACAACTAGAGACGTCAAGGCTATTATCG-CAGG-TGGGGTTA
genomic: ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAGgtgagggatg ... tctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTAT-ATCGGCAGGCTGGGGTTA
EST: gi|208284429|gb|GE085047.1|GE085047
EST:     AGATATGCTGGCAATCAG                         GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
genomic: AGATATGCTGGCAATCAGgtgagggatg ... tctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
EST: gi|209708316|gb|BW683906.1|BW683906
EST:     ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAG                         GAAAGAA-ACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTA
genomic: ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAGgtgagggatg ... tctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaacaaaagcattgttctttctaaactattcattttgttgccctctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAG
                    ttctaaa  putative branch site (score: 2)
                              ttcattttgttgccct  putative PPT
                       taaactattcatttt  TA-rich tract