1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaaattaaaaaagttgaactaactgagttttggaaccctctctctccaccttttccactactagttagagtttctctaacacgtatgtttcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACATGCCGAGCCCTTGTTGAAAGTAA
species | Glycine max |
transcript | GLYMA11G14640.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGG GTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATEST: gi|298165501|gb|HO011550.1|HO011550
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCAT
EST: GGATCATTGGTGGCTTGGAAAAGAGGAACAGG GTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATEST: gi|213616698|gb|DB969194.1|DB969194
genomic: GGATCATTGGTGGCTTGGAAAAGAGGAACAGGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCAT
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGG GTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATEST: gi|193547137|gb|FK502432.1|FK502432
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCAT
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGG GTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATEST: gi|22525594|gb|BU084405.1|BU084405
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCAT
EST: GGCTTGGAAAAGAGGAACAGG GTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATEST: gi|20811828|gb|BQ296306.1|BQ296306
genomic: GGCTTGGAAAAGAGGAACAGGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCAT
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGG GTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCAT
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCAT
tccaccttttccactactagttagagtttctctaacacgtatgtttcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACATGCCGAGCCCTTGTTGAAAGTAA
ctctaac putative branch site (score: 2)
tgtttctt putative PPT
tttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaattaaaaaagttgaactaactgagttttggaaccctctctctccaccttttccactactagttagagtttctctaacacgtatgtttcttaaccagGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACATGCCGAGCCCTTGTTGAAAGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - taaaaaa
- - - - - - - - - - - -ctgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacac