1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaattttatcttttccttttttttaagccattaagccttttggaaacctagggttatctaccacaataaaacatttcctccttgaaatctatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTG
species | Glycine max |
transcript | GLYMA11G13330.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAG ACAAGTTGCGGGAATTAGCTTGGAGTGGTGEST: gi|22525828|gb|BU084639.1|BU084639
genomic: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaac ... tatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTG
EST: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAG ACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAEST: gi|192333733|gb|FK025806.1|FK025806
genomic: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaac ... tatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTA
EST: AAGAATTATGAAGTTCACCAAG-TGCTTTCTGGGACG-TGGTTATATTAG ACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTEST: gi|31561508|gb|CD487346.1|CD487346
genomic: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaac ... tatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTT
EST: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAG ACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTA
genomic: AAGAATTATGAAGTTCACCAAGGTGCTTTCTGGGACGGTGGTTATATTAGgtattttaac ... tatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTA
aacctagggttatctaccacaataaaacatttcctccttgaaatctatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTG
acaataaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaattttatcttttccttttttttaagccattaagccttttggaaacctagggttatctaccacaataaaacatttcctccttgaaatctatattgtagACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - agccatt
- - - - - - - - - - - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa