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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacatcttgctttatttaagatactacgtattgggaaatacgtatgcaattaatctaactcgtgcttttgtataacaagGGATACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGCAG

Basic information

species Glycine max
transcript GLYMA11G13050.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G13050.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G104847_T01 (Zea mays), 3'ss of exon 3
-------------gtaacacatcttgctttatttaagatactacgtattgggaaata---cgtatgcaattaat-----ctaactcgt-gcttttgtataacaagGGATACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGCAG
             ||   |  ||    | | | || | |  ||  |||| | |  |    |||    |||||||     |||||| ||    | |  ||    |||||   |  |||||||||||||| ||||||||||| |||||| | || || ||||||
gtgagtgaagaacgtttgatgtccctgtctgtctatgttgttaattatttgtatgttcatcgtgaagaattaatggcaactaacttgtcaagtgtcgatggacagGGAGCTCACTGTGGCATATATGGATCCAACTGCCCGGAATGGGTTATGGCCATGCAG

upper sequence: GLYMA11G13050.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0063g01880.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------gtaacacatcttgctttatttaagatactacgtattgggaaatacgtatgcaattaatctaactcgtgcttttgtataaca-agGGATACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGCAG
                             || |    | |   |||    | ||    | | | |   | | | |  ||   ||  |    |  | | |||| | |  |  ||||| || | ||||| || ||||| |||||||||||||||||||||||||| ||| ||
gtaagcacgacttccactgaaatggtttagttagggttttcattttgcaaatgagttgatgaaatttcaga-aagagtgaggtttttgagtcctgggtttttttgtttctcagGGAGACAGGTGTGGGATTTATGGATCCAACTGCCCCGAATGGATAATTGCTATGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgtattgggaaatacgtatgcaattaatctaactcgtgcttttgtataacaagGGATACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGCAG
                            atctaac  putative branch site (score: 2)
                                        cttttgt  putative PPT
                       aattaatctaa  TA-rich tract