1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatatatgattgactatctatattaactttgtattgtgaatctgtgtttctgatttgttatgtctatttttattttacatgttttcatttctgtgattagACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAATGTTTTGATTTGGTTATTGAGAAAGGAACTATG
species | Glycine max |
transcript | GLYMA11G12910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGATTCAAAG ACATAAAAGTGCTGCAGGCTGATATGCTAGAGCTACCTTTTGAGGATGAATEST: gi|193609113|gb|FK563895.1|FK563895
genomic: TGTTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGATTCAAAGgtcagcttcc ... ctgtgattagACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAAT
EST: CCGGGGATTCAAAG ACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAATEST: gi|10847982|gb|BF070555.1|BF070555
genomic: CCGGGGATTCAAAGgtcagcttcc ... ctgtgattagACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAAT
EST: TGGTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGATTCAAAG ACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAATEST: gi|298173135|gb|HO020119.1|HO020119
genomic: TGTTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGATTCAAAGgtcagcttcc ... ctgtgattagACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAAT
EST: TGTTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGATTCAAAG ACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGGTGAATEST: gi|7145881|gb|AW507803.1|AW507803
genomic: TGTTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGATTCAAAGgtcagcttcc ... ctgtgattagACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAAT
EST: TGTTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGCTTCAAAG ACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAAT
genomic: TGTTGCAGTTCAAAACATGCAAAAACGGCTATTGTCCCGGGGATTCAAAGgtcagcttcc ... ctgtgattagACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAAT
gtttctgatttgttatgtctatttttattttacatgttttcatttctgtgattagACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAATGTTTTGATTTGGTTATTGAGAAAGGAACTATG
ttctgat putative branch site (score: 3)
ttttcatttct putative PPT
atttgttatgtctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatgattgactatctatattaactttgtattgtgaatctgtgtttctgatttgttatgtctatttttattttacatgttttcatttctgtgattagACATAAAAGTGCTGCAAGCTGATATGCTAGAGCTACCTTTTGAGGATGAATGTTTTGATTTGGTTATTGAGAAAGGAACTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - -gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttt