1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtcaagaggttttcctttgtcttttctatttcatagagatttgtggttgtttatagaatggctttgcagaattatgttagagttgttatgaatctcttttcaataatttgttcttgttgtaatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGAGATCTTGGGTTAAGGAGAATGGTCTACCTGATCATAAAGGAACTCTCCC
species | Glycine max |
transcript | GLYMA11G12610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGAEST: gi|193355637|gb|FK323414.1|FK323414
genomic: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
EST: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGAEST: gi|208245126|gb|GE039896.1|GE039896
genomic: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
EST: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
genomic: TTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
gttagagttgttatgaatctcttttcaataatttgttcttgttgtaatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGAGATCTTGGGTTAAGGAGAATGGTCTACCTGATCATAAAGGAACTCTCCC
ttttcaataatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaagaggttttcctttgtcttttctatttcatagagatttgtggttgtttatagaatggctttgcagaattatgttagagttgttatgaatctcttttcaataatttgttcttgttgtaatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGAGATCTTGGGTTAAGGAGAATGGTCTACCTGATCATAAAGGAACTCTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA