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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagagttagttagttactccctccaacttcattcctattcgttagttaaatattattgctccataccaaattaatttactagtctactgttggaatatgctttcaacttttgaagttcacgtgacttattttattgtatttattggcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAG

Basic information

species Glycine max
transcript GLYMA11G12450.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13787686|gb|BG650278.1|BG650278
EST:     GCCAAGTTGAG                         TTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
genomic: GCCAAGTTGAGgttagagtta ... gcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
EST: gi|7283565|gb|AW596171.1|AW596171
EST:     TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAG                         TTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
genomic: TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagtta ... gcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
EST: gi|7284072|gb|AW596671.1|AW596671
EST:     TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAG                         TTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
genomic: TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagtta ... gcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
EST: gi|22523801|gb|BU082612.1|BU082612
EST:     TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAG                         TTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT
genomic: TGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagtta ... gcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcaacttttgaagttcacgtgacttattttattgtatttattggcacatacagTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAG
                     tgacttattttattgt  TA-rich tract