1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaggttatgaagcttctatataactttgttgcagaaaacactattattgaactcctctatatcttatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAATACACTGTCGAGAGCTGCACTAAGTTTTGCGCAAGCCCA
species | Glycine max |
transcript | GLYMA11G11950.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAG GAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTAEST: gi|298176009|gb|HO015414.1|HO015414
genomic: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttat ... tatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTA
EST: TCGAGGTGTAGAAGGCTATATTGTTACCGGGTCCAAGCAAGTGGAAATAG GAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTAEST: gi|208270412|gb|GE067374.1|GE067374
genomic: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttat ... tatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTA
EST: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAG GAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTAEST: gi|298180588|gb|HO025675.1|HO025675
genomic: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttat ... tatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTA
EST: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAG GAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTAEST: gi|15285961|gb|BI469852.1|BI469852
genomic: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttat ... tatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTA
EST: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAG GAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTAEST: gi|207713583|gb|GD695258.1|GD695258
genomic: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttat ... tatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTA
EST: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAG GAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTAEST: gi|298173699|gb|HO017035.1|HO017035
genomic: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttat ... tatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTA
EST: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAG GAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTAEST: gi|213599808|gb|DB968430.1|DB968430
genomic: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttat ... tatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTA
EST: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAG GAACAAAGTTGTCAGA
genomic: TCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttat ... tatttaacagGAACAAAGTTGTCAGA
ataactttgttgcagaaaacactattattgaactcctctatatcttatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAATACACTGTCGAGAGCTGCACTAAGTTTTGCGCAAGCCCA
atataac putative branch site (score: 3)
ctcctctatatctt putative PPT
tctatatcttatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttatgaagcttctatataactttgttgcagaaaacactattattgaactcctctatatcttatttaacagGAACAAAGTTGTCAGAAGACAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAATACACTGTCGAGAGCTGCACTAAGTTTTGCGCAAGCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC