Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtatggatagttgtttcagttcttctatctccatattttttttttgacacagcctacaatttgtactacaatttccatttattatgatgtttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCAACAGTTTATCGAACCCTGGGTGAGAATTATAATGAAAGGGTCCTGCCTT

Basic information

species Glycine max
transcript GLYMA11G11670.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11670.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 3'ss of exon 4
----tgtatggatagttgtttcagttcttctatctccatattttttttttgacacagcctacaatttgtactacaatttccatttattatgatgtt-tggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCAACAGTTTATCGAACCCTGGGTGAGAATTATAATGAAAGGGTCCTGCCTT
    | |||  |   || ||| ||| |   ||||    |||  |  || |     ||  |  | | ||| |     |   |||  ||  |||| ||   |   |||| || ||||| ||| |||| |||||||| ||||| || |||||||||||  || ||||||||||||| |||||||| || |||||||| |||||||| |
gcaatttatataactttcttttagtgcaa-tatcaaggtatagtcattat----tagtttgaattgtgttcctttctgaacatggatcttgattttactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTGTGCCAGACCAGTTACCTGCAATTTATCGAACCCTTGGTGAGAACTACAATGAAAGAGTCCTGCCCT

upper sequence: GLYMA11G11670.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0085g00730.t01 (Vitis vinifera), 3'ss of exon 4
---tgtatggatagttgtttcagttcttctatctccatattttttttttgacacagcctacaatttgtactacaatttccatttattatgatgtt-tggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCAACAGTTTATCGAACCCTGGGTGAGAATTATAATGAAAGGGTCCTGCCTT
   | | ||   | ||  ||    |    ||||    |||  |  || |     ||  |  | | ||| |     |   | |  ||  |||| ||   |   |||| || ||||| ||| |||| |||||||| ||| | || ||||||||||| ||| ||||||||||||| |||||||| || |||||||| ||||||||||
tcttttctgatgactttcttttaatgagatatcaaggtatagtcattat----tagtttgaattgtgttcctttctgaacgtggatcttgattttactgcacagGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTACAATTTATCGAACCCTTGGTGAGAACTACAATGAAAGAGTCCTGCCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330517|gb|GR841782.1|GR841782
EST:     CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
genomic: CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
EST: gi|15287791|gb|BI471682.1|BI471682
EST:     CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
genomic: CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
EST: gi|213608413|gb|DB972671.1|DB972671
EST:     CACGTCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGAACAGTTACCA
genomic: CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
EST: gi|17962874|gb|BM269622.1|BM269622
EST:     CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
genomic: CACGCCCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
EST: gi|23735502|gb|BU766034.1|BU766034
EST:     CATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATG                         GTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA
genomic: CATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAAATGgtaagtcttt ... tttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacacagcctacaatttgtactacaatttccatttattatgatgtttggtgtagGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAGTTACCAACAGTTTATCGAACCCTGGGTGAGAATTATAATGAAAGGGTCCTGCCTT
 ttttgac  putative branch site (score: 3)
                         aatttccatttattat  TA-rich tract