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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcagtacactacaaatgtcatctttcagcaggatattttaggcattttgaagtttcttttacctttattggctaattctatgagctctataaatagtgtagatgctaacatttctgtactccggtttcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTGGCTAGTGCAGTTTCCAAGACCAACATACTTGTTGTCGAAGGATATCTATTTGAACTTCCTGATA

Basic information

species Glycine max
transcript GLYMA11G11620.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11620.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0039g01580.t01 (Vitis vinifera), 3'ss of exon 3
gttcagtacactacaaatgtcatctttcagcaggatattttaggcattttgaagtttcttttacctttattggc-taattctatgagctctataaatagtgtagatgctaacatttctgtactccggtttcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTGGCTAGTGCAGTTTCCAAGACCAACATACTTGTTGTCGAAGGATATCTATTTGAACTTCCTGATA
                                  ||   |  ||| ||||  | |||   |        ||| | |   | | |  | | |||   || | |   |||| | || | |     ||  ||||||||||||||||| || ||| | |||||||||| |||||||||  || |||| ||||| |||||||||||||||||||||||| | |||||||||||||| |
----------------------------ccttaaatgcctatggccttttacaattttcatattaaactttgacatgtcttttttcggtttatcc-taatatgtctgcttaaatcttta----ccattttcagGGCACATCTTCTACCGTTGATTATGATGCATGCTTGGCTAGCACAATTTCAAAGACGAACATACTTGTTGTCGAAGGATATTTGTTTGAACTTCCTGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13477948|gb|BG507617.1|BG507617
EST:     TTATAGTCCTCACAACTCCAGATGCCCAGCGCACAATGCTTGCATATCAG                         GGCACATCTTCAACTGTTAACTATGATGCATCCTTGGCTAGTGCAGTTTCC
genomic: TTATAGTCCTCACAACTCCAGATGCCCAGCGCACAATGCTTGCATATCAGgttcagtaca ... ccggtttcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTGGCTAGTGCAGTTTCC
EST: gi|19348972|gb|BM893504.1|BM893504
EST:     TTATAGTCCTCACAACTCCAGATGCCCAGCGCACAATGCTTGCATATCAG                         GGCACATCTTCAACTGTTAACTATGATGCATCCTTGGCTAGTGCAGTTTCC
genomic: TTATAGTCCTCACAACTCCAGATGCCCAGCGCACAATGCTTGCATATCAGgttcagtaca ... ccggtttcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTGGCTAGTGCAGTTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctatgagctctataaatagtgtagatgctaacatttctgtactccggtttcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTGGCTAGTGCAGTTTCCAAGACCAACATACTTGTTGTCGAAGGATATCTATTTGAACTTCCTGATA
                           tgctaac  putative branch site (score: 1)
          tctataaata  TA-rich tract