1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgatggagctttctccttgtatatgtatgctatttacatacagtaaggcttatacattataacattgcaatttctaatgactgaattttctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
species | Glycine max |
transcript | GLYMA11G11370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG AAAATTTTAGAGCTTTGTGTACAGEST: gi|192301026|gb|FG987981.1|FG987981
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG AAAATTTTAGAGCTTTGTGTACAGEST: gi|163921467|gb|EH038979.1|EH038979
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG AAAATTTTAGAGCTTTGTGTACAGEST: gi|120533708|gb|EH261841.1|EH261841
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG AAAATTTTAGAGCTTTGTGTACAGEST: gi|213597314|gb|DB964387.1|DB964387
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAANACTGTGG AAAATTTTAGAGCTTTGTGTACAGEST: gi|151406317|gb|EV276132.1|EV276132
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG AAAATTTTAGAGCTTTGTGTACAGEST: gi|298170662|gb|HO019286.1|HO019286
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG AAAATTTTAGAGCTTTGTGTACAGEST: gi|192306070|gb|FG993660.1|FG993660
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG AAAATTTTAGAGCTTTGTGTACAGEST: gi|19053954|gb|BM732621.1|BM732621
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
EST: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGG AAAATTTTAGAGCTTTGTGTACAG
genomic: GTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGgtatgtcatt ... ctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
aaggcttatacattataacattgcaatttctaatgactgaattttctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
ttctaat putative branch site (score: 2)
ttttctgtct putative PPT
ttatacattataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatggagctttctccttgtatatgtatgctatttacatacagtaaggcttatacattataacattgcaatttctaatgactgaattttctgtctgcagAAAATTTTAGAGCTTTGTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- gatggag
- - - - - - -ctccttg
- - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - acataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgactg