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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaaggtatgataatatactcattttttttattccttaggtgatatctcaaacttttctttttgctgaacaataggatatgacaaacttgactgtttactttcagGATTGGTCCCGGTCAGGATATCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAG

Basic information

species Glycine max
transcript GLYMA11G11230.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11230.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 7
gtttaaggtatgataatatactcatttttt-ttattccttaggtgatatc-tcaaacttttctttttgctgaacaataggatatgacaaacttgactgtttac-------tttcagGATTGGTCCCGGTCAGGATATCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAG-
   ||   |     ||| || | | ||  | || || || | |    ||  ||    | || |  || |  |  ||||    |  | |||  | | | ||| |        | |||||||||||  |||||| ||   ||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||| ||||    || || |||||| 
--gtagattgctg-aatctatttacttggtgttgtttctgaagctgcattatcgggttcttatgattac-aagaaataatg-agcataaatcttattctttgcatgtgctctgcagGATTGGTCA-GGTCAGAATGCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttttctttttgctgaacaataggatatgacaaacttgactgtttactttcagGATTGGTCCCGGTCAGGATATCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAG
                                   acttgac  putative branch site (score: 4)
                                            tttactttc  putative PPT
     ttcttttt  TA-rich tract