Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatttgtttattttggataaaaaatgggtacctatcagttgatatacaaattcacgaggttctgtctgctgacttttggaacaacacctcccccctccagtgcatatgttttccagtccttttacggtgatacatttactaactgtgaactatttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT

Basic information

species Glycine max
transcript GLYMA11G10770.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 3'ss of exon 3
gtaagttatttgtttattttggataaaaaatgggtacctatcagttgatatacaaattcacgaggttctgtctgctgacttttggaacaacacctcccccctccagtgcatat-gttttccagtccttttacggtgatacatttactaactgtgaactatttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT
                                                                            |    | |   |||| | | |    | || |    ||  ||||    |    |    || || || ||| |    | |  |||  |  | |||| || || || |||||| | |||||| |||||||||||||||| ||||||||   
----------------------------------------------------------------------------gtaagtggatccaactcttgcagtgttcaatagggatcatttttttttttcctctttgtcattcacttaatgga-gagttctacctgcacagGCACTAAACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAA

upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 3
gtaagttatttgtttattttggataaaaaatgggtacctatcagttgatatacaaattcacgaggttctgtctgctgacttttgga-acaacacctcccccctccagtgcatatgttttccagtccttttacggtgatacatttactaactgtgaa-ctatttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT
                                                                  |  ||    | |   |   | | | ||    |  | |  |   || | ||  ||    || | |      ||    |||||||||| ||| ||  || | |||||  |||| ||||||||  |||||||||||||||| |||||||| |||||||||||
-----------------------------------------------------------------gtaagtaaattaatgatcacatatatcattctctgctttaatcacaga-gtaatctgagccatgtcaaaccattggattactaactgggaagctccttgtgtagGCATTGAACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166168|gb|HO009139.1|HO009139
EST:     AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
EST: gi|7796132|gb|AW781529.1|AW781529
EST:     AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGA
EST: gi|192307619|gb|FG999658.1|FG999658
EST:     AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
EST: gi|9986202|gb|BE660310.1|BE660310
EST:     AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
EST: gi|7796512|gb|AW781909.1|AW781909
EST:     AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
EST: gi|7041859|gb|AW471753.1|AW471753
EST:     AATCTCTTGCTGCAGCCGGAGCTGANATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTNTGAGTCCAGCCTACGG
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGG
EST: gi|298168738|gb|HO009668.1|HO009668
EST:     AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
EST: gi|192306220|gb|FG995056.1|FG995056
EST:     AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
EST: gi|15204411|gb|BI427179.1|BI427179
EST:     AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     GGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: GGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
EST: gi|19053059|gb|BM731726.1|BM731726
EST:     TACCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCT                         GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA
genomic: AATCTCTTGCTGCAGCCGGAGCTGAAATTCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttccagtccttttacggtgatacatttactaactgtgaactatttctatagGCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGT
                              tactaac  putative branch site (score: 0)
                                           ctatttct  putative PPT
                                            tatttctata  TA-rich tract