Sequence
atgc intronic sequence ATGC exonic sequence...cttgataggtagttggaatgattgattcttgaaaataggctagaagttgctgaagactgaatgaaatggctttgtgttcttttggacaactgaaatgcagAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACTTAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCGTCAGAGC
Basic information
species | Glycine max |
transcript | GLYMA11G10330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G10330.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G158679_T01 (Zea mays), 3'ss of exon 3
cttgataggtagttggaatgattgattc-ttgaaaataggctagaagttgctgaaga-----ctgaatgaaatggctttgtgttcttttggacaactgaaatgcagAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACTTAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCGTCAGAGC
| || || || || | || |||| ||| | | | | | | | || | ||| || | | | | | ||||||| || || |||| | || || ||||| ||||||||| |||| || || |||||||| || ||||||||||| |||||| ||||||| || || ||||
------aaacagcacatatttttctttggtctaatatagcctaataatggaggtgggtatttccgtattgatacgctcagtctaatatcttattttttttctgcagAACGGTAAATCTTGCTTGGGTGAGATAATTTATCGATACATAACAGCTGAGCAGTTCTCACCAGAATGTCTCCTAGATTGCTTGGATCTATCATCCGAGC
upper sequence: GLYMA11G10330.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0038g03620.t01 (Vitis vinifera), 3'ss of exon 4
-cttgataggtagttggaatgattgattcttgaaaataggctagaagttgctgaagactgaatgaaatggctttgtgttcttttggacaactgaaat-gcagAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACTTAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCGTCAGAGC
|||| | || ||| || | | | | || ||| | || | | | | | | ||| || | ||| || || |||||||| || || ||||| || ||||| |||||||| ||| | || || || |||||||| || ||||||||||||||||||||||| || || ||||| |
ttttgaacaaca-ttataatcatgaagagtatatggaatgcatcttgtttttcaatttcagttttatttggtagctattcatt-gctcaattgccattacagAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAACAGTTCTCCCCAGAATGTCTCCTTGATTGCCTGGACCTATCATCAGAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgctgaagactgaatgaaatggctttgtgttcttttggacaactgaaatgcagAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACTTAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCGTCAGAGC
aatgaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttgataggtagttggaatgattgattcttgaaaataggctagaagttgctgaagactgaatgaaatggctttgtgttcttttggacaactgaaatgcagAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACTTAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCGTCAGAGC
- - - - - - - ggaatga
- - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatga