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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataaaatcaaaatgtgtacacatacaccatgttattccaaacagattttgaatagatctatggattacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG

Basic information

species Glycine max
transcript GLYMA11G09790.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09790.3 (Glycine max), 3'ss of exon 3
lower sequence: AT5G17060.1 (Arabidopsis thaliana), 3'ss of exon 4
--gtgataaaatcaaaatgtgtaca---catacaccatgttattccaaacagattttgaatagatctatggattacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG
   | |||   ||| ||  || | |   | |     |   | |    |  | |  ||     | |||  ||||| |   |||   |||||||| || ||||| |||||  ||||||||||  |||||||||| |||||||||||| ||
gtataatacc-tcagaacttgcaaaagacttttcgtaaactctctggattataccttaccctgctct-cggattgcc-acagGAGATCATAAAAGACCCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016117|gb|CX702859.1|CX702859
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtgataaaat ... ttacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|23729125|gb|BU762647.1|BU762647
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGTC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtgataaaat ... ttacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|192303487|gb|FG995921.1|FG995921
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtgataaaat ... ttacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|192334432|gb|FK024447.1|FK024447
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtgataaaat ... ttacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|58015262|gb|CX702004.1|CX702004
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtgataaaat ... ttacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|14259783|gb|BG882691.1|BG882691
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtgataaaat ... ttacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|21479719|gb|BQ576402.1|BQ576402
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtgataaaat ... ttacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatacaccatgttattccaaacagattttgaatagatctatggattacttgcagACAATCATAAATGATCCATTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG
                         attttgaata  TA-rich tract