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gtaagaattagtttccattatttattgggttttatcttaatgaaaacacaacttctgcaattcggtatcttgtggagttttccttctattacaaaatcattcatctgtccaatagaactgaaaagacatgatacagatctgtagttgccaggttgatacatatgtgcatatttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG
species | Glycine max |
transcript | GLYMA11G09790.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|9820855|gb|BE556365.1|BE556365
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAACAAEST: gi|192303487|gb|FG995921.1|FG995921
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|151397286|gb|EV267159.1|EV267159
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|192303486|gb|FG995920.1|FG995920
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAEST: gi|14259783|gb|BG882691.1|BG882691
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCA
EST: GAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|58016117|gb|CX702859.1|CX702859
genomic: GAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|58015262|gb|CX702004.1|CX702004
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|23729125|gb|BU762647.1|BU762647
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|151405888|gb|EV275703.1|EV275703
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGCGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|192334432|gb|FK024447.1|FK024447
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGEST: gi|21479719|gb|BQ576402.1|BQ576402
genomic: AGAAATTAAGGGCACTTTGGAGGCACTATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
EST: ATTTTAACAATACTGATGGTTTG ATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
genomic: ATTTTAACAATACTGATGGTTTGgtaagaatta ... atttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAG
gacatgatacagatctgtagttgccaggttgatacatatgtgcatatttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG
ggttgat putative branch site (score: 5)
atatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattagtttccattatttattgggttttatcttaatgaaaacacaacttctgcaattcggtatcttgtggagttttccttctattacaaaatcattcatctgtccaatagaactgaaaagacatgatacagatctgtagttgccaggttgatacatatgtgcatatttatgcagATATATGTTGTTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG