1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gacacaaatgcacaatcattggaaatgtggatattcttgaaattattcagacacaccaggacataaaataatgtgttgcttaataaatttactcttgcagCATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGGAACGCTTATTTGTGTTTCAGGTGCCATATTAATGGTTTTCTATCGTGGT
species | Glycine max |
transcript | GLYMA11G09540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTGTTTACTGTGATCATGGG CATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGGEST: gi|192325573|gb|FK019429.1|FK019429
genomic: ATTTCTGTTTACTGTGATCATGGGgtcagtttca ... actcttgcagCATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGG
EST: GTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACTGTGATCATGGG CATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGGEST: gi|22521758|gb|BU080569.1|BU080569
genomic: GTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACTGTGATCATGGGgtcagtttca ... actcttgcagCATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGG
EST: GTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACTGTGATCATGGG CATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGGEST: gi|18040971|gb|BM309265.1|BM309265
genomic: GTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACTGTGATCATGGGgtcagtttca ... actcttgcagCATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGG
EST: GTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACTGTGATCATGGG CATAGAAAAAGTGAACTTGCTCA
genomic: GTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACTGTGATCATGGGgtcagtttca ... actcttgcagCATAGAAAAAGTGAACTTGCTCA
ttcagacacaccaggacataaaataatgtgttgcttaataaatttactcttgcagCATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGGAACGCTTATTTGTGTTTCAGGTGCCATATTAATGGTTTTCTATCGTGGT
gcttaat putative branch site (score: 4)
tttactctt putative PPT
ataaaataatgtgttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacacaaatgcacaatcattggaaatgtggatattcttgaaattattcagacacaccaggacataaaataatgtgttgcttaataaatttactcttgcagCATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGGAACGCTTATTTGTGTTTCAGGTGCCATATTAATGGTTTTCTATCGTGGT
- - - aatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - acacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct