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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttcatttcacttgtatcatttatcaatttcaagttgtatgtgcgtgcatcctagaactcaaaaacacaaaggcatgcactcacttgcagtgcagaaatgtgtatattaataaacttattcagatacactgggacatacagtaatctgtatctgtataaaccttttcatgcagTACAGAAAGAGTGAACTTACTCAGATATGATGGTCTGGCAAAAGTTGGAGGAACTATTATCTGTGTCTCTGGTGCCATATTTATGGTTTTGTATCGTGGT

Basic information

species Glycine max
transcript GLYMA11G09520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 3
gtcagtttcatttcacttgtatcatttatcaatttcaagttgtatgtgcgtgcatcctagaactcaaaaacacaaaggcatgcactcacttgcagtgcagaaatg-tgtatattaataaacttattcagatacactgggacatacagtaatctgtatc-tgtataaacctt-ttcatgcagTACAGAAAGAGTGAACTTACTCAGATATGATGGTCTGGCAAAAGTTGGAGGAACTATTATCTGTGTCTCTGGTGCCATATTTATGGTTTTGTATCGTGGT
                                                                                                | |    || |  || |       || ||| || |   || |    | |  |  ||  ||||   ||||| | || || |||||||||||||| ||| || |||||||||  ||| |||| ||  || |||||||| ||  || | ||||| |||||||||||||| |||||| ||| ||| || 
------------------------------------------------------------------------------------------------gtaagtttgatccatttctgacccctgatttaggtgatcttgctgttgct-tgttcaatatcacatataagctttgttaatgcagTACAGAAACAGTTAATTTACTCAGAACTGAAGGTCAGGTGAAGGTTGGAGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTTCTGTTTCGAGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284065|gb|AW596665.1|AW596665
EST:     ATACAGCCATCCATTCCAGTCTTTACCTTTCTGTTGGCTGTAATGATGGG                         TACAGAAAGAGTGAACTTACTCAGATATGATGGTCTGGCAAAAGTTGGAGG
genomic: ATACAGCCATCCATTCCAGTCTTTACCTTTCTGTTGGCTGTAATGATGGGgtcagtttca ... tttcatgcagTACAGAAAGAGTGAACTTACTCAGATATGATGGTCTGGCAAAAGTTGGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagatacactgggacatacagtaatctgtatctgtataaaccttttcatgcagTACAGAAAGAGTGAACTTACTCAGATATGATGGTCTGGCAAAAGTTGGAGGAACTATTATCTGTGTCTCTGGTGCCATATTTATGGTTTTGTATCGTGGT
                                          ccttttcat  CT-rich tract
                                  tgtataaa  TA-rich tract