Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaagtaattttacacttgatgagcaaaattttaaggggttgttatttgagccaaattaactttgattacactctcagctattagtttgtttatatcagatcccttgttttgattgtttccgagatgtacacctaattgtcttgtaattataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAA

Basic information

species Glycine max
transcript GLYMA11G09370.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09370.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 3'ss of exon 3
gtattcaagtaattttacacttgatgagcaaaattttaaggggttgttatttgagccaaattaactttgattacactctcagctattagtttgtttatatcagatcccttgttttgattgtttccgaga-tgtacacc-taattgtcttgtaattataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAA
                                                            |||   |  ||  ||   |  ||||||  ||   || |  || |    || | |||||  ||||| | | | || |    || ||| || || || |  ||||||||||||||| ||| | |||||||||||||||||||| || ||||| || ||
-----------------------------------------------------------tttataatccatagcagggtgcgctatt--ttcaatttt--caaaattattctgttgataatttccaatactatataatacaagtgtattctacttgtggatagGTGACTTCATGCAAACTGTGGCGGCAAGTGGGAGAGTCCTTTAAACCCCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208174528|gb|GD969973.1|GD969973
EST:     GCTGTGGAGAGCTGTAACGAGATTGGGCGGCTATGACAAG                         GTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCG
genomic: GCTGTGGAGAGCTGTAACGAGATTGGGCGGCTATGACAAGgtattcaagt ... ttataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCG
EST: gi|208124142|gb|GD921978.1|GD921978
EST:     GCTGTGGAGAGCTGTAACGAGATTGGGCGGCTATGACAAG                         GTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCG
genomic: GCTGTGGAGAGCTGTAACGAGATTGGGCGGCTATGACAAGgtattcaagt ... ttataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgttttgattgtttccgagatgtacacctaattgtcttgtaattataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAA
                            acctaat  putative branch site (score: 3)
                               taattgtcttgtaatt  TA-rich tract