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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtacactcccactgtatgcttatattatttcttgaagatctattcctattctagacatatctaattcttgtcggttgcagATCGCTACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGTCCACTTGACAAATTGTTGA

Basic information

species Glycine max
transcript GLYMA11G09180.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09180.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g02130.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------gtgaga-gtacactcccactgtatgc-----ttatattatttcttgaagatctattcctattctagacatatctaattcttgtcggttgcagATCGCTACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGTCCACTTGACAAATTGTTGA
                                    || |    || |   |     | |     ||  ||||  |||   | |  |||    | | |  | ||||||| | ||||      |||| | || | ||  ||||||| ||| || ||  |||||||||| ||||||||||| ||||| || |||||||| ||||| || |||||||||  | |  || 
gtgagcacattatgcctctatttcggtttgctttccgaaatactcatttttagcacttacccgcctttcattagctctctgacaattatatgcaatatccatatatcta-tgcttgataa--gcagGTAGCCATTGGGGGAGCTCGATCAAAAGACCTCTTTGACAGACATGGGGATCTGAAAAGAATCCGAAGGCTGAAATTCTGGCCACTTGACCGAATACTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193328857|gb|FK297005.1|FK297005
EST:     GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCGCGGAAG                         ATCGCTACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
genomic: GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCGCGGAAGgtgagagtac ... tcggttgcagATCGCTACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
EST: gi|58014760|gb|CX701502.1|CX701502
EST:     GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCGCGGAAG                         ATCGCTACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
genomic: GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCGCGGAAGgtgagagtac ... tcggttgcagATCGCTACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcttgaagatctattcctattctagacatatctaattcttgtcggttgcagATCGCTACTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGTCCACTTGACAAATTGTTGA
                                 atctaat  putative branch site (score: 3)
                                       ttcttgtc  CT-rich tract
                               atatctaatt  TA-rich tract