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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcctcttctcattttctttgtggtcaaggtatagcagtgagcatggattttaaattgataattttacccttttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAACAGGGCCTGATTACTATTTCTTGTAAACATTTATAAGTAGATTTTCTGGT

Basic information

species Glycine max
transcript GLYMA11G09150.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09150.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g03130.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------gtgagtcctct----tctcattttctttgtggtcaaggtatagcagtgagcatggattttaaattgataattttacccttttac-tgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAACAGGGCCTGATTA-CTATTTCTTGTA--AACATTTATAAGTAGATTTTCTGGT
                          |   ||   |    | | |||| |  | |||  | | ||  | | | |||   |  |||       | || | ||  || ||| ||||||| || ||||||||||||||||| |||||||| || ||||| || || | | ||      | |  |  || |||||  ||    ||    |  || | |    
gtaggttaatttttcatcttgttttatttttctcttaatattttatttaccatttggatatgatactgtaattagctcagccttttg-caattgatgtcacaattgtacctgcagGTTATTAGAGGAAATAGTGTGGTTACTGTTGAAGCTCTTGAGCCAGTAAGCCGGATGCAGTGAATTGATTTTTGTATCAATGCCTAATGCTGTATCTACA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730335|gb|BM525820.1|BM525820
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGATGCGCTTGAACC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACC
EST: gi|31561892|gb|CD487730.1|CD487730
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|254346216|gb|GR859829.1|GR859829
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|298176503|gb|HO026738.1|HO026738
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCTGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|151398942|gb|EV268813.1|EV268813
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|192327127|gb|FK015519.1|FK015519
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|31467429|gb|CD409457.1|CD409457
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|31306974|gb|CD392177.1|CD392177
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|151412914|gb|EV282726.1|EV282726
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|19452429|gb|BM953839.1|BM953839
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|33388212|gb|CA851419.1|CA851419
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|6667111|gb|AW278570.1|AW278570
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
EST: gi|193327961|gb|FK295550.1|FK295550
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCT
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCT
EST: gi|151410461|gb|EV280276.1|EV280276
EST:     ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTG                         GTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC
genomic: ACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGgtgagtcctc ... tttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggtatagcagtgagcatggattttaaattgataattttacccttttactgcagGTAATCAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAACAGGGCCTGATTACTATTTCTTGTAAACATTTATAAGTAGATTTTCTGGT
                           aattgat  putative branch site (score: 4)
                                    ttttacccttttact  putative PPT
                     attttaaattgataat  TA-rich tract