1 5' 3' | 2 5' 3' | 3 5' 3' |
...caccctttccttgccctccctattattgagaaaatcatactctaattcttgcgtacgttaagattgaatatataaaaaactgaatgccatgcctttgcagGTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGCAATGATAAAGTAGTAGAACAACAGAAAGCGAACCCAGTGGC
species | Glycine max |
transcript | GLYMA11G08920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCATGCCGGGAG GTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAEST: gi|11413754|gb|BF425765.1|BF425765
genomic: AGTCATGCCGGGAGgtatagttct ... gcctttgcagGTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAA
EST: TGCAAATACAGCGGCAGGTATTGCTGGAGGCACTGGAGTCATGCCGGGAG GTAATGGTGGGGCTGATCACGCTGTGTTTGAACAAG-TGCTT-AGCAGGAA
genomic: TGCAAATACAGCGGCAGGTATTGCTGGAGGCACTGGAGTCATGCCGGGAGgtatagttct ... gcctttgcagGTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAA
ttcttgcgtacgttaagattgaatatataaaaaactgaatgccatgcctttgcagGTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGCAATGATAAAGTAGTAGAACAACAGAAAGCGAACCCAGTGGC
tgccttt CT-rich tract
ttaagattgaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccctttccttgccctccctattattgagaaaatcatactctaattcttgcgtacgttaagattgaatatataaaaaactgaatgccatgcctttgcagGTAATGTTGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGCAATGATAAAGTAGTAGAACAACAGAAAGCGAACCCAGTGGC
- ccctttc
- - - - - - -ccctccc
- - - - - - - - - - - - - - - - - -catactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgcc