1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atcaatgtaaaaaatacttcaaatctactatagtaagcttagtggtgaaaaatttaagtagtttgtattaattagtcttctttttatactttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAAGGGGTCAAGGTTTCTTACACAATCATTGCCGCATGCTTATTTCCCATGG
species | Glycine max |
transcript | GLYMA11G08770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAG TCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAAEST: gi|209719028|gb|BW674842.1|BW674842
genomic: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaac ... ttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
EST: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAG TCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAAEST: gi|213604363|gb|DB970595.1|DB970595
genomic: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaac ... ttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
EST: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAG TCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
genomic: GTATCATTGCCTTTGCTTTCAGGGGCCACAATCTCATCCTTGAAATTCAGgtatgggaac ... ttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAA
tgaaaaatttaagtagtttgtattaattagtcttctttttatactttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAAGGGGTCAAGGTTTCTTACACAATCATTGCCGCATGCTTATTTCCCATGG
tattaat putative branch site (score: 2)
tcttctttttatactt putative PPT
tttgtattaattagtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaatgtaaaaaatacttcaaatctactatagtaagcttagtggtgaaaaatttaagtagtttgtattaattagtcttctttttatactttccttgcagTCTACTATGCCTTCAAGCGAGAAGCATCCATCACACGTGCCCATGTGGAAAGGGGTCAAGGTTTCTTACACAATCATTGCCGCATGCTTATTTCCCATGG
- - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - agtggtg