1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgcaaactttaatccaaaagtgcacttattgcagcaatgagacttgagatttgctcatgaacttcctcttcttgctgacaactctgctcttgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCGGGGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCCAAAA
species | Glycine max |
transcript | GLYMA11G08540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCEST: gi|207751071|gb|GD723512.1|GD723512
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCEST: gi|207737211|gb|GD713603.1|GD713603
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAEST: gi|192309482|gb|FK000956.1|FK000956
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAA
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTTGATGAG-TTCAAA-CATCTTCGACACCEST: gi|209720570|gb|BW677305.1|BW677305
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
EST: TTGTGCGGGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTEST: gi|208340427|gb|GE136185.1|GE136185
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGT
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCEST: gi|193545485|gb|FK499540.1|FK499540
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTEST: gi|193529103|gb|FK486086.1|FK486086
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTT
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCEST: gi|207790152|gb|GD760001.1|GD760001
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCEST: gi|193324800|gb|FK288054.1|FK288054
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTCGATGAGGTTCAAAACATCTTCGACACCEST: gi|13478239|gb|BG507793.1|BG507793
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACC
gagatttgctcatgaacttcctcttcttgctgacaactctgctcttgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCGGGGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCCAAAA
tgctgac putative branch site (score: 2)
ctctgctcttgctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaaactttaatccaaaagtgcacttattgcagcaatgagacttgagatttgctcatgaacttcctcttcttgctgacaactctgctcttgcttatcagATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCGGGGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
tgcaaac
- - - - - -atccaaa
- - - - - - - - - - tgcactt
- - - - - - - - - - - - - - -tgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgct