Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttttgctgctctttttagaaaattattttcatgatatgtttttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattaggttgtgtattatgttcccagGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAGAACATGATCGGTACCTTTTACCAACCTCAGTGTGTGCTTATAGACACAG

Basic information

species Glycine max
transcript GLYMA11G08350.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08350.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G66120.2 (Arabidopsis thaliana), 3'ss of exon 3
gtcttttgctgctctttttagaaaattattttcatgatatgtttttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattaggttgtgtattatgttcccagGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAGAACATGATCGGTACCTTTTACCAACCTCAGTGTGTGCTTATAGACACAG
                                                || |  |||     | |||    |  ||  ||  |  | ||  |  |   | |  |   | | | |   ||| |  | |    |  |  | || |       ||||| |||||||| || ||||| ||||| || |||||||| || ||||| |||||  |||||||| | ||||||||||| |||||||||||  ||||||| |
-----------------------------------------------gtacatttttcacttcactgtaggaatttcttgtctaaaatcattaacatccagaaa--aaaggttttttatttctcgct--gcaattcatttaattgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAGAATTTGATCGGTGCATTTTACCAACCACAGTGTGTGCTAGTAGACACTG

upper sequence: GLYMA11G08350.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03820.t01 (Vitis vinifera), 3'ss of exon 3
gtcttttgctgctctttttagaaaattattttcatgatatgtttttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattaggttgtgtattatgttcccagGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAGAACATGATCGGTACCTTTTACCAACCTCAGTGTGTGCTTATAGACACAG
                                              |  | |          ||     |||| ||  |  || ||  ||  |    | || |    || | | |    | |      | ||     | | || | || | |||| |||||||||||||| || |||||||| ||||| || |  || || || ||  |||| ||| | || ||||||||||||||||| ||||||||||| |
----------------------------------------------aaaaaaaaaccaaaaactaactttaatattctt--ttttaaacttggcacttatgttg--aatttcagctggcttctgaaaaaataac---tattttttttttctagGTGGATTCTTCAGTTGGAGGCAAAACTGGCATAAACCATCCTCTAGGAAAAAATTTGATTGGTGCTTTCTACCAACCTCAGTGTGTACTTATAGACACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205560|gb|BU964813.1|BU964813
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGGGATGGCACAG                         GTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGTGATGGCACAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAG
EST: gi|23727257|gb|BU761656.1|BU761656
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGTGATGGCACAG                         GTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGTGATGGCACAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAG
EST: gi|6481925|gb|AW201196.1|AW201196
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGTGATGGCACAG                         GTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGTGATGGCACAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAG
EST: gi|151408017|gb|EV277832.1|EV277832
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCTTACAACTGTGATGGCACAG                         GTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGTGATGGCACAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctatctatgttatcccattccctgttcattaggttgtgtattatgttcccagGTCGATTCTTCAGTTGGTGGAAAAACTGGGATAAATCACCGCCTTGGGAAGAACATGATCGGTACCTTTTACCAACCTCAGTGTGTGCTTATAGACACAG
                                              tgttccc  CT-rich tract
                                         tattatgtt  TA-rich tract