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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgaagatacatgctacacttattccttacatttgatcttgcaaatagcattacttttgatgataaggtagaatgttgtaggtaaaatttatgcctctatttcatttctgttttaagtcaccaactacactttgtacagGTAGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTACAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTT

Basic information

species Glycine max
transcript GLYMA11G08310.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08310.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtttgaagatacatgctacacttattccttacatttgatcttgcaaatagcattacttttgatgataaggtagaatgttgtaggtaaaatttatgcctctatttcatttctgttttaagtcaccaactacactttgtacagGTAGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTACAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTT
                                           ||    |||  || | ||||   |  |  ||| || ||    | || | ||  ||   | ||    ||       ||||   |      ||||||||| ||||| || || |||||||| |||||||| || || |||||| |||| || || ||||||  |||||| ||| | || || |||||||||||  | |||||||
----------------------------------------atgctaaagaatgccaatgctttcatttgtt-ggttgattggctcatgttatat--attattataagctatcaagaaattaaa--aaaggtaacactttgtgcagGTGGGGGTTATCATCATTCCAAGAAAATACATAATGGGGAAGGTCGAGGAGAGAGCCCTCAAAACATTGATCATACTAATATCTGCATCTCTGTGTATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttatgcctctatttcatttctgttttaagtcaccaactacactttgtacagGTAGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTACAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTT
             tatttcattt  TA-rich tract