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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatgaaatatgaacatgtcaatgcattaccttgtctttctcaaaaaccatttttttgatttggttatacctctttatagCACACGGAAAGAGAATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTAAGGGACCTCCTTAGTCCAGACTGTACCCCTCTCAGACTTC

Basic information

species Glycine max
transcript GLYMA11G07950.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07950.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g43400.4 (Oryza sativa), 3'ss of exon 3
gtagatgaaatatgaacatgtcaatgcattaccttgtctttctcaaaaaccatttttttgatttggttatacctctttatagCACACGGAAAGAGAATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTAAGGGACCTCCTTAGTCCAGACTGTACCCCTCTCAGACTTC
||   || ||| |||||||     ||| |||| ||  || |   ||||   ||   | | |||  ||   |   ||  | ||||  | |||||||||||||| ||||  ||||||||||| ||||| || |||||| |||| ||||||||||| || |  |||   || || ||||||||||
gtgtgtgcaatgtgaacat-----tgctttactttacctctgcgaaaatttatccgtctcattgtgtgccattgct--acagCATCCTGAAAGAGAATTCATTTTGAGATTTTCGGCAATAGAGATATACAATGAAGCTGTGAGGGACCTCCTGAGCCACGACACCACACCCCTCAGACTTC

upper sequence: GLYMA11G07950.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G51150.2 (Arabidopsis thaliana), 3'ss of exon 5
---------------gtagatgaaatatgaacatgtcaatgcattaccttgtcttt-ctcaaaaaccatt--tttttgatttggttatac-ctctttatagCACACGGAAAGAGAATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTAAGGGACCTCCTTAGTCCAGACTGTACCCCTCTCAGACTTC
                 |||      ||    || | |  ||||||  |    ||   |||  |||  |    |||| |     ||||    | |||  ||||||  ||||||||||||||  ||||||| || || || ||||| |||||||| |||||||| |||||| | ||| |||||  ||  || |||||| |||
gtaaagttaacaatatcagagtcttcatagtaatcttaccgcattatttccaattcattcagtaactgtcgccttttaaaaaaattatttgttttttgcagCACAATGAAAGAGAATTCATTCTGAAGTTCTCAGCCATGGAGATCTATAATGAGTCTGTAAGAGACCTCTTGAGTACAGACATTAGTCCACTCAGAGTTC

upper sequence: GLYMA11G07950.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 3
gtagatgaaatatgaacatgtcaatgcattaccttgtcttt--ctcaaaaaccatttttttgatttggtta----------tacctctttatagCACACGGAAAGAGAATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTAAGGGACCTCCTTAGTCCAGACTGTACCCCTCTCAGACTTC
|||    ||| |  |  || |||   | || |||    ||    || | ||       |||  |||| | |          ||    ||| ||||||| ||||||||||||  | |||||||| || || || |||||||| ||||||||||| || ||||| || ||  ||||   | | || ||  ||||||
gtaatcaaaacaccactatatcatcccctttcctctctttcagttccataatttcccatttcctttgatgaaaaaaattgttatacatttgtagCACAAGGAAAGAGAATTTCTTTTGAAGTTCTCTGCTATGGAGATTTACAATGAATCTGTCAGAGACCTTCTCAGCTCAGATACTGCTCCGCTTCGACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaccttgtctttctcaaaaaccatttttttgatttggttatacctctttatagCACACGGAAAGAGAATTCATGTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTAAGGGACCTCCTTAGTCCAGACTGTACCCCTCTCAGACTTC
                            ttttgat  putative branch site (score: 4)
                                          tacctcttt  putative PPT
                 aaaaaccattttttt  TA-rich tract