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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcctcttttgtccctttcatacacaaaattaacctttgatttgtaccatgttttggttttcactgatgttatcgacggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG

Basic information

species Glycine max
transcript GLYMA11G07810.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6725714|gb|AW310113.1|AW310113
EST:     AGGCTCTTCAG                         GTGATATTCTGGCATCCGGTTCCGCTGCATCCCCATATCTACAGTANCGGC
genomic: AGGCTCCTCAGgttcctcttt ... ggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|15664873|gb|BI702244.1|BI702244
EST:     ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAGgttcctcttt ... ggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|16343412|gb|BI969007.1|BI969007
EST:     TCCTGAGAATTACCCAATGGAGGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: TCCTGAGAATTACCCAATGGAGGCTCCTCAGgttcctcttt ... ggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|151393796|gb|EV263671.1|EV263671
EST:     ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAGgttcctcttt ... ggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|254317299|gb|GR826244.1|GR826244
EST:     ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAGgttcctcttt ... ggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|10238896|gb|BE807792.1|BE807792
EST:     ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAGgttcctcttt ... ggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|254317300|gb|GR826245.1|GR826245
EST:     ACCAGCTTCAGGTTGATTTT-CTGAGAATTACCCAATGGAGGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAGgttcctcttt ... ggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctttgatttgtaccatgttttggttttcactgatgttatcgacggttttacagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCACATTTGTTTAG
       atttgta  TA-rich tract