1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcatttaccatttcgaagtttatgtctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC
species | Glycine max |
transcript | GLYMA11G07530.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTNATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|254328447|gb|GR835412.1|GR835412
genomic: AGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|192310086|gb|FK000650.1|FK000650
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: AAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|31469770|gb|CD411798.1|CD411798
genomic: AAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: AGTATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|192333274|gb|FK026155.1|FK026155
genomic: AGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|58022382|gb|CX709123.1|CX709123
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|22930561|gb|BU547700.1|BU547700
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: ATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|192321262|gb|FK014352.1|FK014352
genomic: ATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|58018488|gb|CX705230.1|CX705230
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTEST: gi|192316544|gb|FK009313.1|FK009313
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
EST: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG GTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
genomic: AAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGgtgtggttgc ... cccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTT
tctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC
ataactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggttgccattttcttgcattcctcttcttcatttccttatgcttgatgtatttgcaaaatatgaaagactttcttttaataggatagtattctcatttaccatttcgaagtttatgtctgtactgaagcataactaactcactaacgaatgtgctgatcaacccaacttagGTTGATCGTATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA