1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tactgttttggaatgcttacatggttgtcttttgctttttatccatgtgggtgtttgtttacagttggtgttaacaatgtttttattcttcatctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAGGTGCCCTTACTCCTGAAGAAATAGCTAAG
species | Glycine max |
transcript | GLYMA11G07330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAG AGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAEST: gi|192299303|gb|FG988703.1|FG988703
genomic: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGgttaaatttg ... catctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
EST: CAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAG AGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAEST: gi|151394539|gb|EV264410.1|EV264410
genomic: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGgttaaatttg ... catctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
EST: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAG AGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAEST: gi|298163052|gb|HO011785.1|HO011785
genomic: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGgttaaatttg ... catctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
EST: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAG AGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAGACAGGACATAAAAEST: gi|192330133|gb|FK020493.1|FK020493
genomic: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGgttaaatttg ... catctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
EST: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAG AGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAEST: gi|192313863|gb|FK010311.1|FK010311
genomic: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGgttaaatttg ... catctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
EST: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAG AGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAEST: gi|254337626|gb|GR849472.1|GR849472
genomic: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGgttaaatttg ... catctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
EST: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAG AGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAEST: gi|151393722|gb|EV263597.1|EV263597
genomic: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGgttaaatttg ... catctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
EST: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAG AGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
genomic: GAAGGTTGGATGATTGCAAATTCGAGCTCGATAACCTTCTCAAGGAAGAGgttaaatttg ... catctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAA
tgtgggtgtttgtttacagttggtgttaacaatgtttttattcttcatctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAGGTGCCCTTACTCCTGAAGAAATAGCTAAG
tgttaac putative branch site (score: 2)
tttttattcttcatct putative PPT
ttaacaatgtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgttttggaatgcttacatggttgtcttttgctttttatccatgtgggtgtttgtttacagttggtgttaacaatgtttttattcttcatctaacagAGGCTATCCGGAGCATCTTTACTGATACTTGCAAATAAACAGGACATAAAAGGTGCCCTTACTCCTGAAGAAATAGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -tgttttg
- - - - - gaatgct
- - - - - - - - - - - - - - cttttgc
- - - - - - - - - - - - - - - - - - - - -tccatgt
- - - - - - - - - - - - - - - - - - - - - - - - gggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtg