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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttatattgactcccaaatcttttcatcctattattatcaattagaagctaactgttggatccttcctctcctccccccattccctgtcccgttttcttgccttttcaatcaatgcagCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTT

Basic information

species Glycine max
transcript GLYMA11G06650.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06650.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 7
gttagttatattgactcccaaatctttt-catcctattattatcaattagaagctaactgttggatccttcctctcctccccccattccctgtcccgttttcttgccttttcaatcaatgcagCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTT
                  ||  | ||    ||   |||  | | |||  |||  ||| | |  ||  ||   ||     |   ||     ||| | ||||  ||| ||     ||   | |||||||  ||||||||||||||  | ||||||||||||||||| || ||| | || ||||| |||||| | |||||||| |||||||||||||||||  | |
----------------gtcagttgttcgatatagcatttctgttaataggaaaataaatttaagaatctgattcgaaaac---cagatgttgttctgttt--ttggctc----atggtttcagCCAAAAGATACAAAATATCTCATTCTTGATGATGGTCGAAAACTGTGTCTTGAATGTCTCGACTCAGCCATTATGGACACTCATGAATGCCAACCATTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193464302|gb|FK434078.1|FK434078
EST:     CGCATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAG                         CCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTA
genomic: CACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGgttagttata ... atcaatgcagCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctctcctccccccattccctgtcccgttttcttgccttttcaatcaatgcagCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTT
                                       ttttcaat  TA-rich tract