1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctcccctccctctcacactctgtttacttccatctagtttctgttgatgtttgatctgacttgaagtaataaaagaaccaagacgtctgaattatgcagGGATTGATGGAGCACCATAAGGAAATAGCAGAGTATTTCAATCGTAGACGTGTTTCTATTATATTTCTTTTCCGGAGAAACTTGCTACGCAGGATGGTAT
species | Glycine max |
transcript | GLYMA11G06080.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAAGAATGAGTGCTCTGCTGCAACTGGCTTGAAGTGGATGCTTAATCAG GGATTGATGGAGCACCATAAGGAAATAGCAGAGTATTTCAATCGTAGACGTEST: gi|24135607|gb|BU926117.1|BU926117
genomic: CCAAGAATGAGTGCTCTGCTGCAACTGGCTTGAAGTGGATGCTTAATCAGgtgcacatac ... aattatgcagGGATTGATGGAGCACCATAAGGAAATAGCAGAGTATTTCAATCGTAGACGT
EST: CCAAGAATGAGTGCTCTGCTGCAACTGGCTTGAAGTGGATGCTTAATCAG GGATTGATGGAGCACCATAAGGAAATAGCAGAGTATTTCAATCGTAGACGT
genomic: CCAAGAATGAGTGCTCTGCTGCAACTGGCTTGAAGTGGATGCTTAATCAGgtgcacatac ... aattatgcagGGATTGATGGAGCACCATAAGGAAATAGCAGAGTATTTCAATCGTAGACGT
tgatgtttgatctgacttgaagtaataaaagaaccaagacgtctgaattatgcagGGATTGATGGAGCACCATAAGGAAATAGCAGAGTATTTCAATCGTAGACGTGTTTCTATTATATTTCTTTTCCGGAGAAACTTGCTACGCAGGATGGTAT
atctgac putative branch site (score: 3)
ttgaagtaataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcccctccctctcacactctgtttacttccatctagtttctgttgatgtttgatctgacttgaagtaataaaagaaccaagacgtctgaattatgcagGGATTGATGGAGCACCATAAGGAAATAGCAGAGTATTTCAATCGTAGACGTGTTTCTATTATATTTCTTTTCCGGAGAAACTTGCTACGCAGGATGGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - ctccctc
- - - - - - - cacactc
- - - - - - - - - - - - - - - ccatcta
- - - - - - - - - - - - - - - - - - -gtttctg
- - - - - - - - - - - - - - - - - - - - - - - -atgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaagac