1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgccacatataccttctaatatgcaattatattttgactccttcagtactacttaatcatacacataatttatttatggttagtactttaactaacattagtgtttgattccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTGCGTACTACTTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATG
species | Glycine max |
transcript | GLYMA11G05190.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAG GTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTGEST: gi|17518979|gb|BM188021.1|BM188021
genomic: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacata ... ttccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
EST: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAG GTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTGEST: gi|13240205|gb|BG359514.1|BG359514
genomic: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacata ... ttccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
EST: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAG GTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTGEST: gi|105632291|gb|DW246397.1|DW246397
genomic: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacata ... ttccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
EST: TTAGAGAGAAGAGTCGGGAAGAGTTGCTTGAACTGATTCCCAAAATTCAG GTTATGGCTCGATCCTCACCTTTAGACAAACACACACTGGTGAAACACTTG
genomic: TTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGgtgccacata ... ttccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTG
cataatttatttatggttagtactttaactaacattagtgtttgattccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTGCGTACTACTTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATG
ttcctttt CT-rich tract
tttatttatggtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccacatataccttctaatatgcaattatattttgactccttcagtactacttaatcatacacataatttatttatggttagtactttaactaacattagtgtttgattccttttagGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTGCGTACTACTTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA