Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctcacatgatttgaataataagttggcataagtgtctgtcaagactcaagagctctgtcaagaaaactttctgataaatttgatatttttgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT

Basic information

species Glycine max
transcript GLYMA11G04330.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 3'ss of exon 3
tctcacatgatttg-aataataa-gttggcataagtgtctgtcaagactcaagagct-----ctgtcaagaaaactttctgataaatttgatatttttgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
      |||||||  ||||  || ||     | | |   | |        || ||||     || ||  |    |||| |  | || ||  | |||   |  | ||||| | ||| |||||||||| ||| |||| ||||| || || ||  |||| ||||| ||||||||||| || ||||| || ||||||||||||||||||||
------atgatttttaatagcaatgtcatttttaattcgttttgcattataaaagctctttcctatcctgcctcctttttccttaaatttgt-tttacatgctgtagGCAGACAGTCTTTCCTAAACACTTCAAAATGGATAGAGGAAGTTAGAACTGAGAGGGGCAGTGATGTTATCATTGTGCTGGTTGGGAACAAAACTGATCT

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G075719_T02 (Zea mays), 3'ss of exon 3
-----------------------------------------------------------------tctcacatgatttg-aataataagttggcataagtgtctgtcaagactcaagagc-tctgtcaagaaaactttctgataaatttgatat-ttttgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
                                                                    ||||| | | | || ||| | | || |    | ||| | |||  | |||  | |   |    |  | ||| |  | |  || || | |||  |  | ||||| ||||| ||||| |||||||  | |||||||| || || || || || ||||| ||||||||||| || ||||| |||||||||||||||||||| ||
gtaatctctctctgtctctctcgcacacacaaacacacattctttaggaaaaaaaatggtatcagatgcacatcagtagcaacaatgactaggaagttttatcttttaaggattaaggacataaatttttactattttattcttacctttatttgtttcatgttgtagGCAGGCAGTCTTTCTTAAATACATCCAAGTGGATAGATGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCT

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 3
---------------------------------------------------tctcacatgatttg-aataataagttggcataagtgtctgtcaagactcaagagctctgtcaagaaaactttctgataaatt----tgatatttttgttgtat-----agGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
                                                    | ||||| | |   || ||| | | || |    | ||| | ||   |  |   || |    | | ||  || |  ||  ||    | |  ||||||||  ||     |||| ||||| | ||| |||||||  | |||||||| || || || || || ||||| ||||||||||| || ||||| |||||||||||||||||||| ||
gtaatctccctctctcatacacacacattctatagaaatagttgttgtcagacgcacatcagtaacaacaatgactaggaacttatatcttttaaaggtttaagcctttaaggacataaacttttactattttgttcttacctttttgtttcatgttgtagGCAGGCAGTCCTTCTTAAATACATCTAAGTGGATAGAGGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCT

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0021g00640.t01 (Vitis vinifera), 3'ss of exon 3
tctcacatgatttgaataataagttggcat----aagtgtctgtcaagactcaagagctctgtcaagaaaactttctgataaatttgata--tttttgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
    ||||| |||| |  | |  |||||||    ||     | |    |         |||||  |    | ||| | |  | | ||  |  |||||||  | ||||| ||||| | ||||| || ||||| ||||||||||| ||||| || || ||| ||||||||||||| || ||||| ||||||||||||||||| || ||
----acatgttttggacta-attttggcattggcaaactattttttgtatatgttgcatctgt-gatgtgattttttaactactctggcacctttttgtgttttagGCAGGCAGTCATTCCTTAACACTGCCAAGTGGATTGAGGAGGTTCGTACTGAGCGAGGCAGTGATGTTATCATTGTCCTTGTTGGGAACAAAACAGACCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321711|gb|FK013159.1|FK013159
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|7925544|gb|AW831570.1|AW831570
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298167985|gb|HO013248.1|HO013248
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254335666|gb|GR847194.1|GR847194
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|7589497|gb|AW705278.1|AW705278
EST:     ATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: ATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|21256067|gb|BQ452955.1|BQ452955
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|16995877|gb|BM085249.1|BM085249
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|21285946|gb|BQ473817.1|BQ473817
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|7326801|gb|AW620599.1|AW620599
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|22521828|gb|BU080639.1|BU080639
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|17519308|gb|BM188350.1|BM188350
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|6455258|gb|AW185941.1|AW185941
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298172883|gb|HO019867.1|HO019867
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGCATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|18038975|gb|BM307269.1|BM307269
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|15336976|gb|BI497632.1|BI497632
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|19345951|gb|BM890831.1|BM890831
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|13562826|gb|BG551046.1|BG551046
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|19270723|gb|BM886979.1|BM886979
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193450649|gb|FK412125.1|FK412125
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATACGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|27809327|gb|CB063749.1|CB063749
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|6482030|gb|AW201301.1|AW201301
EST:     AGCTACATTAGGGACTCATCTGGAGCTGGTAATGGGATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AGCTACATTAGGGACTCATCTGTAGCTGTTATTGT-ATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|23064316|gb|BU579081.1|BU579081
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|16347115|gb|BI972710.1|BI972710
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGCATATGATGGTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGCGGATTGAAGAGGTGCCAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298179445|gb|HO027916.1|HO027916
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGATGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|15200563|gb|BI424413.1|BI424413
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|192312364|gb|FK005368.1|FK005368
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|19347258|gb|BM892138.1|BM892138
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|192295843|gb|FG990881.1|FG990881
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|15203113|gb|BI425881.1|BI425881
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254317511|gb|GR826495.1|GR826495
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|6963922|gb|AW432615.1|AW432615
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|15285867|gb|BI469758.1|BI469758
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298166969|gb|HO010408.1|HO010408
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298164387|gb|HO014032.1|HO014032
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298197945|gb|HO039484.1|HO039484
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193438913|gb|FK410366.1|FK410366
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATACGATGTTGCAA                         GCCGGCAGACTT
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTT
EST: gi|19347531|gb|BM892411.1|BM892411
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|192325398|gb|FK018369.1|FK018369
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|7234439|gb|AW569776.1|AW569776
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|20207974|gb|BQ134063.1|BQ134063
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254338044|gb|GR849676.1|GR849676
EST:     ATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: ATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|27426112|gb|CA937632.1|CA937632
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTTCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207787674|gb|GD761038.1|GD761038
EST:     AGCTACATTAGGGACTCCATCTGTAGCTGTTATTGTATATGATGTTGCGA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AGCTACATTAGGGACT-CATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|11274538|gb|BF324884.1|BF324884
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298191544|gb|HO039023.1|HO039023
EST:     AGGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGA
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGA
EST: gi|213603624|gb|DB966780.1|DB966780
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|192321351|gb|FK012112.1|FK012112
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207830544|gb|GD804168.1|GD804168
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|192312363|gb|FK005367.1|FK005367
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254335665|gb|GR847193.1|GR847193
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|14258722|gb|BG881630.1|BG881630
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298174968|gb|HO014885.1|HO014885
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|15000837|gb|BI321651.1|BI321651
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298166706|gb|HO010145.1|HO010145
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|192300259|gb|FG987836.1|FG987836
EST:     ATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: ATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|12489882|gb|BG043403.1|BG043403
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254338043|gb|GR849675.1|GR849675
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254344521|gb|GR851218.1|GR851218
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|298172675|gb|HO019715.1|HO019715
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254318765|gb|GR830329.1|GR830329
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|7924237|gb|AW830263.1|AW830263
EST:     AAGCTACATTANGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|12690087|gb|BG156423.1|BG156423
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254317510|gb|GR826494.1|GR826494
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|4291546|gb|AI441777.1|AI441777
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254331479|gb|GR843436.1|GR843436
EST:     TGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: TGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|14259139|gb|BG882047.1|BG882047
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|13788156|gb|BG650748.1|BG650748
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|23053072|gb|BU577563.1|BU577563
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254344522|gb|GR851219.1|GR851219
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|11412380|gb|BF424391.1|BF424391
EST:     AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATTAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaagagctctgtcaagaaaactttctgataaatttgatatttttgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
                                         tttttgtt  CT-rich tract
                  aaaactttctgataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctcacatgatttgaataataagttggcataagtgtctgtcaagactcaagagctctgtcaagaaaactttctgataaatttgatatttttgttgtatagGCCGGCAGACTTTCCTAAATACTGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
-ctcacat
- - - - - - - - - - - - - - - - gtgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa