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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgactaatctgtattattaggccattagcaactaatcattttctcttttttgttctctatatttccctttttcttaaggggtatatgaatttgtctcacactccctcattctgtccccccctcccctgcccccaaaatctacagAGTTCCAAGTCTTTTAACTGGCCAGATGTTGCTGTTTCAGCCATGGTTGCTCTCGAAAAAGCTTCTCATGATGCTCTCTCATCAGATTCTATGAAGTACA

Basic information

species Glycine max
transcript GLYMA11G02560.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024016|gb|CX710757.1|CX710757
EST:     TGACTGTCAAGATAAGGTTCAGAAG                         AGTTTCAAGTCTTTTAACTGGCCAGATGTTGCTGTTTCAGCCATGGTTGCT
genomic: TGACTGTCAAGATAAGGTTCAGAAGgtgtgactaa ... aaatctacagAGTTCCAAGTCTTTTAACTGGCCAGATGTTGCTGTTTCAGCCATGGTTGCT
EST: gi|7691555|gb|AW759680.1|AW759680
EST:     AGCATAGAAGTTCAGAATCAGCAACTGACTGTCAAGATAAGGTTCAGAAG                         AGTTCCAAGTCTTTTAACTGGCCAGATGTTGCTGTTTCAGCCATGGTTGCT
genomic: AGCATAGAAGTTCAGAATCAGCAACTGACTGTCAAGATAAGGTTCAGAAGgtgtgactaa ... aaatctacagAGTTCCAAGTCTTTTAACTGGCCAGATGTTGCTGTTTCAGCCATGGTTGCT
EST: gi|14008792|gb|BG725396.1|BG725396
EST:     TAGAAGTTCAGAATCAGCAACTGACTGTCAAGATAAGGTTCAGAAG                         AGTTCCAAGTCTTTTAACTGGCCAGATGTTGCTGTTTCAGCCATGGTTGCT
genomic: TAGAAGTTCAGAATCAGCAACTGACTGTCAAGATAAGGTTCAGAAGgtgtgactaa ... aaatctacagAGTTCCAAGTCTTTTAACTGGCCAGATGTTGCTGTTTCAGCCATGGTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtctcacactccctcattctgtccccccctcccctgcccccaaaatctacagAGTTCCAAGTCTTTTAACTGGCCAGATGTTGCTGTTTCAGCCATGGTTGCTCTCGAAAAAGCTTCTCATGATGCTCTCTCATCAGATTCTATGAAGTACA
   gtctcac  putative branch site (score: 3)
           ctccctcattctgtcc  CT-rich tract
                                            aaaatcta  TA-rich tract