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gtaaaaattcctttgtcctttttaattgaggcaactttacttatggtagttttttttttttttttttttaaatagttggagaagttgcttcactgttgtgttgggtgggtcatgtctagtatgtacactttttaaattctcttttcatgtcaagtttatttgtgtttgttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACATACCTGCTGTCATGCTTCCATTAGATGCAGGTACAAGGCTGGAAAAAAT
species | Glycine max |
transcript | GLYMA11G02540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAG AACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACAEST: gi|209716106|gb|BW668645.1|BW668645
genomic: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
EST: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAG AACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACAEST: gi|254341536|gb|GR852673.1|GR852673
genomic: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
EST: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAG AACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACAEST: gi|298185066|gb|HO030279.1|HO030279
genomic: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
EST: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAG AACTGTACAAGATGGTTTGCGAACCTGATEST: gi|213597069|gb|DB968164.1|DB968164
genomic: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGAT
EST: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAG AACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
genomic: TGCACAGAATGCTAATGCTTCGGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
tacactttttaaattctcttttcatgtcaagtttatttgtgtttgttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACATACCTGCTGTCATGCTTCCATTAGATGCAGGTACAAGGCTGGAAAAAAT
tttttaaattctcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaattcctttgtcctttttaattgaggcaactttacttatggtagttttttttttttttttttttaaatagttggagaagttgcttcactgttgtgttgggtgggtcatgtctagtatgtacactttttaaattctcttttcatgtcaagtttatttgtgtttgttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACATACCTGCTGTCATGCTTCCATTAGATGCAGGTACAAGGCTGGAAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA