Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatacatgtcctttcacttatgtgcctctttgttttgcatgaaagtgactttatttaactgtttaattttaattgtggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATATCACCAGATAGTGATCCGAGCAATTCCATTCAAGACAAGGGGTTAATCAA

Basic information

species Glycine max
transcript GLYMA11G02530.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02530.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g47220.1 (Oryza sativa), 3'ss of exon 2
-------gtatatacatgtcc-tttcacttatgtgcctctttgttttgca-tgaaagtgactttatttaactg--tttaattttaattg--tggct-tacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATATCACCAGATAGTGATCCGAGCAATTCCATTCAAGACAAGGGGTTAATCAA
       ||||  | | |||    ||| |  || |   | |  ||  ||| ||  | | | ||      |||   |     |  ||||   ||| | | |||||||| ||||||||||| || |||||||| ||||||||||| ||  | || |||||| | || ||| | ||||||||||||||||  |||   ||| |  
tattactgtatg-ataagtctacatcattagtgagga-catgattgagcaatggcacttaattacaagcactaactcccgctgcaatttgctggttctgcagTGGATCTTCTGGGTTGGCCCCTTCATTGGCGCTGCCCTTGCTGCCATCTACCACCAGGTGGTCATCAGGGCAATTCCATTCAAGAGCAGGTCGTAACCTG

upper sequence: GLYMA11G02530.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g02420.t01 (Vitis vinifera), 3'ss of exon 3
-------gtatatacatgtcctttcacttatgtgcctctttgttt-tgcatgaaagtgactttatttaactgtttaattttaattgtggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATATCACCAGATAGTGATCCGAGCAATTCCATTCAAGACAAGGGGTTAATCAA
         ||   ||   ||  |||||| |    ||| |  ||| |   ||||  || |||   || | |   |  ||||  ||||  | | ||||||||||||||||||||||| |||||||||||||| ||||| || || || ||||||||||| ||| |||| || ||||||||||| || |  | |  ||
gtaagctccatgatcagacccaatcacttct-catctcatcatttatctgtgaatctgccttgtattgatttcattcttttg-ttgttcccttcagTGGATTTTCTGGGTTGGACCCTTCATTGGAGCTGCTCTTGCTGCCTTGTACCACCAGATAGTAATCAGAGCCATCCCATTCAAGACCAGAGCCTGAGAAA

upper sequence: GLYMA11G02530.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g02410.t01 (Vitis vinifera), 3'ss of exon 3
------------------gtatatacatgtcctttcacttatgtgcctctttgttt-tgcatgaaagtgactttatttaactgtttaattttaattgtggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATATCACCAGATAGTGATCCGAGCAATTCCATTCAAGACAAGGGGTTAATCAA
                   ||||   |   ||  |  ||| |    ||| |  | | |   ||||  ||||||   || |   ||| ||| |  ||||  |   ||||||||||||||||||||||| |||||||||||| | || ||  | || || ||||||||||| ||| |||| || ||||||||||| || |  | |  ||
gtaagtgaaaacattgctctataagaagacccaatagcttct-catctcgtcatctatctgtgaatctgacttgtattga---tttcattcttgttgttcccatcagTGGATTTTCTGGGTTGGACCCTTCATTGGAGCTACTCTGGCTACCTTGTACCACCAGATAGTCATCAGAGCTATCCCATTCAAGACCAGAGCCTGAGAAA

upper sequence: GLYMA11G02530.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g03390.t01 (Vitis vinifera), 3'ss of exon 3
---------------------gtatatacatgtcctttcacttatgtgcctctt--tgttttgcatgaaagtgacttta---tttaactgtttaattttaattgtggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATATCACCAGATAGTGATCCGAGCAATTCCATTCAAGACAAGGGGTTAATCAA
                       | | | |   |     | || ||   |  ||  || ||    |||   | | || |   | | | |||    ||||   | | |||| |||||||| |||||||| ||||| |||||||||||||| ||||| ||  | || || |||||||| ||| |||| |||||||||||||  |||| || |    
gtaggtgttttgatgagaaaaaaaaaaaaaaacctaaggaattttgcatcctttgatggttaaattgagtttcagttcaagttcttattgtgactttttttctcttgctttcagTGGATCTTCTGGGTGGGACCGTTCATTGGAGCTGCTCTTGCTGCCATGTACCAGCAGATAGTCATCAGAGCCATTCCATTCAAGAGCAGGGCTTGAGATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208295980|gb|GE092230.1|GE092230
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|6848062|gb|AW350352.1|AW350352
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|19270654|gb|BM886910.1|BM886910
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|192325960|gb|FK016637.1|FK016637
EST:     GTCTTGGTGCTGCTATAATATACA-CAGAGACCATGCTTGGGATGACCAT                         TGGATTTTCTGGGT-GGAC-TTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|21601397|gb|BQ611728.1|BQ611728
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|10842879|gb|BF066240.1|BF066240
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         AGGATTTTCTGGGTTGGACCTCTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|4285014|gb|AI440853.1|AI440853
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTNTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|192317537|gb|FK011299.1|FK011299
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTTTTTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|15663877|gb|BI701248.1|BI701248
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|193433096|gb|FK398730.1|FK398730
EST:     GGGATGACCAT                         TGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|14125700|gb|BG790138.1|BG790138
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTCGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
EST: gi|18848973|gb|BM568083.1|BM568083
EST:     GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCAT                         TGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT
genomic: GTCTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATgtatatacat ... tggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgcatgaaagtgactttatttaactgtttaattttaattgtggcttacagTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCAGCTTTATATCACCAGATAGTGATCCGAGCAATTCCATTCAAGACAAGGGGTTAATCAA
                                    ttttaat  putative branch site (score: 3)
               tgactttatttaactg  TA-rich tract