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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatgcatcatgtttttaattggtttatatcttactattcctaaactaatgtgactaatttattatgcagGAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTT

Basic information

species Glycine max
transcript GLYMA11G01780.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403084|gb|EV272894.1|EV272894
EST:     TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA                         GAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
genomic: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
EST: gi|19452768|gb|BM954178.1|BM954178
EST:     TACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA                         GAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
genomic: TACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
EST: gi|6727132|gb|AW311486.1|AW311486
EST:     CTACAAGGAGTAA-TGAAAAGTCCCTGACAA                         GAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
genomic: CTACAAGGAG-AAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattggtttatatcttactattcctaaactaatgtgactaatttattatgcagGAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTT
                                     gactaat  putative branch site (score: 2)
        tttatatcttactatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatgcatcatgtttttaattggtttatatcttactattcctaaactaatgtgactaatttattatgcagGAGACAACAACATCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGTCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC