1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatacttcacacacattacttccttgttaagatcaattacttttctctgaaagtcttgtgtgtttgcattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAACTCTTTTGAAGCTTGATGAGATAAACAAAACATTGCTACCACTTAGTG
species | Glycine max |
transcript | GLYMA11G01340.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGG ATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAEST: gi|213593699|gb|DB971721.1|DB971721
genomic: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGGgtatacttca ... cattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGA
EST: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGG ATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAEST: gi|51343237|gb|CO983970.1|CO983970
genomic: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGGgtatacttca ... cattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGA
EST: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGG ATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAEST: gi|192294418|gb|FG987347.1|FG987347
genomic: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGGgtatacttca ... cattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGA
EST: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGG ATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAEST: gi|192326479|gb|FK017256.1|FK017256
genomic: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGGgtatacttca ... cattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGA
EST: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGG ATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAEST: gi|151394898|gb|EV264769.1|EV264769
genomic: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGGgtatacttca ... cattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGA
EST: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGG ATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGA
genomic: AATTGCAGGGAACTGATTTTTGGAAGCTAAGACGAGCATACTCACCTGGGgtatacttca ... cattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGA
ccttgttaagatcaattacttttctctgaaagtcttgtgtgtttgcattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAACTCTTTTGAAGCTTGATGAGATAAACAAAACATTGCTACCACTTAGTG
aattactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacttcacacacattacttccttgttaagatcaattacttttctctgaaagtcttgtgtgtttgcattttgcagATACAGGAGTATGTTGAAGCTGCTACATTCTATGGTTTCTGTAAAAGTGGAACTCTTTTGAAGCTTGATGAGATAAACAAAACATTGCTACCACTTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC