Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatggtggctgggcttattttgatcactgttattgactcagtgttttaatcttattaagattgtatcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT

Basic information

species Glycine max
transcript GLYMA11G00890.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00890.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g18550.1 (Oryza sativa), 3'ss of exon 3
------------gtatgatggtggctgggcttattttg--atcactgttattgactcagtgttt--taatcttattaagattgtatcttc-ctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT
             |    || |   |   | | || ||   |  |||| ||    |  ||  |   || ||| |   |     ||| ||| |||||| |||  ||| || || |||||  | ||||| |||||    ||||||||||| || |||||||| |||||||||||||||||||| ||||| || |   
gtaagaatgagcattgattgttcattaatccttttgtgttgtatctgtgatcccttttgtcctatgtagtctaaaccaatacatattttctctagGGCATGAGTTTTACCACGGACAAACTTAGGTCCTTGGTCAAGAAATGGCAAACATTGATTGAAGCCCATGTGGATGTTAAGACCACAGATAACTACATGC

upper sequence: GLYMA11G00890.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os12g21798.1 (Oryza sativa), 3'ss of exon 3
gtatgatggtggctgggcttattttgatcactgttattgactcagtgttttaatcttattaagattgtatcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT
   | ||| |       ||       || |||  |   |  |     ||||  | |||   || ||||||  |   |||| |||  |||||| || |||||| | || || |||||    |||||||| ||  |||| || |||||||||||||| |||||||||||||| || |   
--gtaatgcttctcttactgtgcaaaattacttctccaggttgtaatttttgttgttaaccag-ttgtattgt---agGGCATGAGTTTCACGACCGACAAGCTCAGATCATTGGTCAAGAAATGGCAGACGCTAATAGAGGCTCATGTGGATGTAAAGACCACTGATAACTACATGC

upper sequence: GLYMA11G00890.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G34670.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgatggtggctgggcttattttgatcactgttattgactcagtgttttaatcttattaagattgtatcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT
||| |||   | |    | | |  ||        ||||||  ||| ||       || ||||  |   ||||   ||||| |||||||||||||| |||||| | ||||| ||||||   || ||||| ||||| |||||||| ||||| ||||| || ||||| ||    || || |
gtaagataaagaccactcctttactggc-----atattgatacagagtgcgg---tttttaatctgtgatctctgtagGGTATGGATTTCACAACCGACAAGCTAAGGTCATTGGTGAAGAAGTGGCAGACTTTGATTGAAGCCCATGTCGATGTGAAAACCACAGACGGCTACACCT

upper sequence: GLYMA11G00890.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------gtatgatggtggctgggcttattttgatcactgttattgactcagtgttttaatcttattaagattgtatcttcct---------agGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT
                                         |||   |  ||  |    ||||||| ||   ||| ||| | | | | ||||||    ||     |  | || |  |         ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| || || || |
gtatgacagagatcctgaggtcctataaattttcattctatgtaatcttatgattatttttatttttatttatgt-atttatttatt-ttttaacaaaatgtttttcttttccttttggaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAACATTGATTGAAGCTCATGTGGATGTGAAGACAACTGACAACTACACCT

upper sequence: GLYMA11G00890.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S46_147V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------gtatgatggtggctgg--gcttattttgatcactgttattgactcagtgtt-ttaatcttattaagattgtatcttcct-agGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT
                  | |     ||||   |  | | || |||   |  | ||  | |   |||||  | | |  ||  |  ||  ||     | ||||||||||  ||||||| |||||| || ||||| |||| || || ||||| | |||||| |||||||| || ||||| ||||||||||| || ||     
gacgaagtcatggtattgggagagcagtggtacgttgttgatgttggctaaaggtaagggcatcgtgttacttaacggatcgacctttgattaaattcagGGAATGGACCTCACAACCGACAAGCTGCGGTCTCTGGTTCGCAAGTGGCAGAGTTTAATCGAAGCTCACGTTGATGTGAAGACCACTGACAACTACCAGA

upper sequence: GLYMA11G00890.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S174_49V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------------gtatgatggtggctgggcttatttt--gatcactgttattgactcagtgttttaatcttattaagattgtatcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT
                    |  | | |       || | ||| |  ||  | |  |  ||||    | |  | || || | |    || ||  |  ||||| ||||| || ||||| |||||| || ||||| ||||||| || ||||| | ||| || ||||||||||||||||| || ||||| || |||||     
ccgagagggcttcttgagaggagttaagaacaggtggttgattctaggaggaatcctcatgacaggttatggtcatattctgacagctgaattcttgtagGGCATGGACTTGACAACCGACAAGCTGCGGTCTCTGGTGCGCAAGTGGCAGAGTTTGATCGAAGCTCATGTGGATGTAAAAACCACGGACAATTACCAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180407|gb|HO021960.1|HO021960
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACCGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|6455572|gb|AW186255.1|AW186255
EST:     TTTGAGAGCTGAGGACGTTCAAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: TTTGAGAGCTGAGGACGTTC-AAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|9564182|gb|BE473691.1|BE473691
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|58023319|gb|CX710060.1|CX710060
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|6072640|gb|AW102027.1|AW102027
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|24135455|gb|BU925965.1|BU925965
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298168802|gb|HO009732.1|HO009732
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAGGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|209702288|gb|BW652368.1|BW652368
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|15813962|gb|BI786237.1|BI786237
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|6072903|gb|AW102290.1|AW102290
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298174443|gb|HO014588.1|HO014588
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|8826958|gb|BE210688.1|BE210688
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298179710|gb|HO024925.1|HO024925
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|207713548|gb|GD696231.1|GD696231
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298170667|gb|HO019291.1|HO019291
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|23727546|gb|BU761807.1|BU761807
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|192307342|gb|FK000726.1|FK000726
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298194378|gb|HO041026.1|HO041026
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGATCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|4292422|gb|AI437760.1|AI437760
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|37995080|gb|CF806669.1|CF806669
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|13791308|gb|BG653899.1|BG653899
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298193302|gb|HO033736.1|HO033736
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|7458646|gb|AW666096.1|AW666096
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|208288367|gb|GE086116.1|GE086116
EST:     TTTGAGAGCTGAGGACGTTCAAGGGAAGAAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: TTTGAGAGCTGAGGACGTTCAAGGGAAGAA-TGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298187904|gb|HO031861.1|HO031861
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|19053253|gb|BM731920.1|BM731920
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|23727433|gb|BU761746.1|BU761746
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298187155|gb|HO034304.1|HO034304
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|7685314|gb|AW755962.1|AW755962
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGCTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|4313563|gb|AI460682.1|AI460682
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|17021860|gb|BM092894.1|BM092894
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298170351|gb|HO018975.1|HO018975
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|11688279|gb|BF595955.1|BF595955
EST:     GTTTGAGAGCTTAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|208093672|gb|GD893089.1|GD893089
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|31458532|gb|CD400560.1|CD400560
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|19269561|gb|BM885817.1|BM885817
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|208175317|gb|GD976404.1|GD976404
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|213607261|gb|DB957125.1|DB957125
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|208200391|gb|GD997678.1|GD997678
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|57575225|gb|CX548200.1|CX548200
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|7285795|gb|AW598282.1|AW598282
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|58022410|gb|CX709151.1|CX709151
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|298176257|gb|HO015662.1|HO015662
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|192317788|gb|FK010178.1|FK010178
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|192308959|gb|FK001735.1|FK001735
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|23727850|gb|BU761961.1|BU761961
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|208329053|gb|GE128391.1|GE128391
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|51335530|gb|CO979396.1|CO979396
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|58022183|gb|CX708924.1|CX708924
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|192308958|gb|FK001734.1|FK001734
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|23064624|gb|BU579397.1|BU579397
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
EST: gi|4437091|gb|AI522956.1|AI522956
EST:     GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGG                         GGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA
genomic: GTTTGAGAGCTGAGGACGTTCAAGGGAAGAATGTTCTGACAAACTTCTGGgtatgatggt ... atcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatcactgttattgactcagtgttttaatcttattaagattgtatcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT
                                            tatcttcct  CT-rich tract
                        ttttaatcttattaag  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgatggtggctgggcttattttgatcactgttattgactcagtgttttaatcttattaagattgtatcttcctagGGAATGGATTTCACAACTGACAAGTTGAGGTCTTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTTAAGACCACTGATAATTATACAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA