1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagtaaataattaatcttgaataaatttgtagttgctttactgtgttattgggaattttgatttgatgaatgttttagtgtgttttggtgttgcgtgcagGTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGTCACTACTAACAAAGTGAAGCCAACTTGCGTATCTCTCATTCATACGGGA
species | Glycine max |
transcript | GLYMA10G43750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACTTGAGGAAGTGCGAAATAAGATTATTTAAGAAATGGTAGCCTGAGAG GTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGTEST: gi|13788275|gb|BG650867.1|BG650867
genomic: AACTTGAGGAAGTGCGAAATAAGATTATTTAAGAAATGGTAGCCTGAGAGgtatgattcc ... ttgcgtgcagGTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGT
EST: AACTTGAGGAAGTGCGAAATAAGATTATTTAAGAAATGGTAGCCTGAGAG GTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGTEST: gi|254314182|gb|GR831811.1|GR831811
genomic: AACTTGAGGAAGTGCGAAATAAGATTATTTAAGAAATGGTAGCCTGAGAGgtatgattcc ... ttgcgtgcagGTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGT
EST: AACTTGAGGAAGTGCGAAATAAGATTATTTAAGAAATGGTAGCCTGAGAG GTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGTEST: gi|192334351|gb|FK024422.1|FK024422
genomic: AACTTGAGGAAGTGCGAAATAAGATTATTTAAGAAATGGTAGCCTGAGAGgtatgattcc ... ttgcgtgcagGTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGT
EST: AACTTGAGGAAGTGCGAAATAAGATTATTTAAGAAATGGTAGCCTGAGAG GTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGT
genomic: AACTTGAGGAAGTGCGAAATAAGATTATTTAAGAAATGGTAGCCTGAGAGgtatgattcc ... ttgcgtgcagGTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGT
ttattgggaattttgatttgatgaatgttttagtgtgttttggtgttgcgtgcagGTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGTCACTACTAACAAAGTGAAGCCAACTTGCGTATCTCTCATTCATACGGGA
aattttgatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtaaataattaatcttgaataaatttgtagttgctttactgtgttattgggaattttgatttgatgaatgttttagtgtgttttggtgttgcgtgcagGTCATAGTGGAAATGTGTTTTTTCTGGTAGGCCATTTGCCCGCAGTTAGGTCACTACTAACAAAGTGAAGCCAACTTGCGTATCTCTCATTCATACGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - -gttgctt
- - - - - - - - - - - - - - - - - - - tactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtt