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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttcatctatccatccacgagttttaacagattctgttttcatgtagacatggcctaacttttcccccatgtttgctacagATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATTTGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT

Basic information

species Glycine max
transcript GLYMA10G43050.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43050.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaatgttcatctatccatccacgagttttaacagattctgttttcatgtagacatggcctaacttttcccccatgt-ttgctacagATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATTTGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT
            || |     |  | |  ||||  ||   ||| |||| |    ||   ||||  |||     |  | ||| | ||||||||||| ||||| |||||||||||||||||  | ||  ||||||||||||| || || ||| |   ||| |||| | | ||    || ||  ||||  
-----------gtaacttcaaaaaactagtaactaata--gttctcatttttcaat--tctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagattctgttttcatgtagacatggcctaacttttcccccatgtttgctacagATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATTTGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT
                          gcctaac  putative branch site (score: 2)
                                cttttcccccatgttt  CT-rich tract
                             taactttt  TA-rich tract